[Home] | [Total List]

[188575_s_at]

Description F44E7.4 /REP_DB=WormBase Gene ID /WP=CE10402 /TR=O16249 /GB=AAC25789.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 33      6grp_total > 44      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1337
1 2 3 4 range
A 1636.8
(0.3)
P 		2239.3
(3)
P 		2203.9
(2.8)
P 		902.3
(-3)
P 		1337
B 1867.3
(2.7)
P 		1779.7
(2)
P 		1902.1
(3)
P 		1133.4
(-3)
P 		769
C 1780
(0.8)
P 		1798.4
(0.9)
P 		2161.4
(3)
P 		1108.1
(-3)
P 		1053
avr 1761.4
(1.1) 		1939.1
(2.1) 		2089.1
(3) 		1047.9
(-3) 		1041

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1155
1 2 3 4 5 6 range
A 1340.4
(-2.7)
P 		1978.5
(3)
P 		1845.1
(1.8)
P 		1311.3
(-3)
P 		1394.1
(-2.3)
P 		1683.7
(0.3)
P 		667
B 1530.4
(-0)
P 		1983.7
(3)
P 		1960.9
(2.8)
P 		1380.2
(-1)
P 		1084
(-3)
P 		1503.4
(-0.2)
P 		900
C 1343.4
(-2.2)
P 		1916.1
(1.1)
P 		2239.4
(3)
P 		1208.4
(-3)
P 		1261.3
(-2.7)
P 		1580.1
(-0.8)
P 		1031
avr 1404.7
(-1.8) 		1959.4
(2.6) 		2015.1
(3) 		1300
(-2.6) 		1246.5
(-3) 		1589.1
(-0.3) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 596
(3)
P 		486.1
(1.6)
P 		576.1
(2.7)
P 		132.1
(-3)
P 		464
B 595.5
(3)
P 		439.6
(0.4)
P 		440.8
(0.4)
P 		241.5
(-3)
P 		354
C 589.2
(1.3)
P 		517.1
(0.5)
P 		753.3
(3)
P 		186.8
(-3)
P 		567
avr 593.6
(3) 		480.9
(1.3) 		590.1
(2.9) 		186.8
(-3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 247.1
(-3)
P 		703.6
(3)
P 		401.8
(-1)
P 		332.6
(-1.9)
P 		420.7
(-0.7)
P 		409.9
(-0.9)
P 		457
B 532.5
(0.4)
P 		660.3
(3)
P 		476.2
(-0.7)
P 		365.6
(-3)
P 		440.4
(-1.5)
P 		560.6
(1)
P 		295
C 497.9
(1.5)
P 		584.6
(3)
P 		570
(2.7)
P 		243
(-3)
P 		408.2
(-0.1)
P 		528.9
(2)
P 		342
avr 425.8
(-1) 		649.5
(3) 		482.7
(0) 		313.7
(-3) 		423.1
(-1) 		499.8
(0.3) 		336
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188575_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11665
Sequence Type Exemplar sequence
Representative Public ID F44E7.4 NCBI
Target Description F44E7.4 /REP_DB=WormBase Gene ID /WP=CE10402 /TR=O16249 /GB=AAC25789.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171929(11), NM_171461(11), NM_072113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171929 NCBI Caenorhabditis elegans F44E7.4a (peptidase) mRNA, complete cds. 11/11 None
NM_171461 NCBI Caenorhabditis elegans F44E7.4b (peptidase) mRNA, complete cds. 11/11 None
NM_072113 NCBI Caenorhabditis elegans F44E7.4c (peptidase) mRNA, complete cds. 11/11 None
SNAP00000006988 ENSEMBL cdna:SNAP chromosome:CEL140:V:5775593:5779179:-1 11/11 None
GENEFINDER00000006999 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5775593:5779536:-1 11/11 None
F44E7.4a ENSEMBL cdna:known chromosome:CEL140:V:5775433:5779536:-1 gene:F44E7.4 11/11 None
F44E7.4b ENSEMBL cdna:known chromosome:CEL140:V:5775593:5779536:-1 gene:F44E7.4 11/11 None
F44E7.4c ENSEMBL cdna:known chromosome:CEL140:V:5775593:5779249:-1 gene:F44E7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028757 6/11 Cross Hyb Matching Probes None
F44E7.4d 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178966 4 3 NM_072113 188575_s_at (11)
NM_171461 188575_s_at (11)
NM_171929 188575_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5775592-5779536(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44E7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25789 Hypothetical protein F44E7.4a [Caenorhabditis elegans] ref|NP_741543.1| F44E7.4a [Caenorhabditis elegans] 0.0
blast AAM45374 Hypothetical protein F44E7.4b [Caenorhabditis elegans] ref|NP_741542.1| F44E7.4b [Caenorhabditis elegans] 0.0
blast AAO12429 Hypothetical protein F44E7.4c [Caenorhabditis elegans] ref|NP_504514.2| F44E7.4c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 4.6E-32
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 5.0E-26
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.0E-61
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 5.0E-26
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 4.6E-32
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 5.0E-26
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:188575_S_AT
aaccagcattcaacactctcagaactaacgaagcccttggctacattgtttggactggat
ctcgcctgaactgtggaactgtagcactcaatgttatcgtacaaggaccaaagagtgttg
atcatgttcttgaacgcatcgaagtgttcttggagtcggttcgtaaagaaattgctgaaa
tgccacaagaggaattcgataatcaagtttctggaatgattgctcggcttgaagagaagc
cgaaaacgttgagtagcagattcagaagattctggaatgagattgaatgccgacagtaca
attttgcacgtagagaagaagaagttgcacttctgaaaactatcaagaaagatgacgtcc
ttgaactctttgacaagaaaatccgcaaagatgcagcggaacggcgcaagcttgctgtct
tcgtccacggaaagaatgaggaccaggaggctgtcaacactattatcaagaagaatgccg
aatctggaaagaaagaaaaggaagttctctattcggatcaacttcgacaattccttccac
tgtatggacgaccaatcgcagctatagactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAGCATTCAACACTCTCAGAAC 66 149 2588 Antisense
GAAGCCCTTGGCTACATTGTTTGGA 172 345 2617 Antisense
CATTGTTTGGACTGGATCTCGCCTG 512 217 2631 Antisense
GATCTCGCCTGAACTGTGGAACTGT 81 419 2645 Antisense
GAAGTGTTCTTGGAGTCGGTTCGTA 460 335 2728 Antisense
GATGACGTCCTTGAACTCTTTGACA 583 405 2938 Antisense
TTGCTGTCTTCGTCCACGGAAAGAA 641 687 2999 Antisense
GAGGACCAGGAGGCTGTCAACACTA 119 405 3025 Antisense
GGATCAACTTCGACAATTCCTTCCA 481 509 3102 Antisense
ATTCCTTCCACTGTATGGACGACCA 671 7 3117 Antisense
GACGACCAATCGCAGCTATAGACTT 512 379 3134 Antisense
Sequence Source Affymetrix Proprietary Database