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[188572_s_at] sulfatase

Description K09C4.8 /REP_DB=WormBase Gene ID /WP=CE04736 /TR=Q21376 /GB=AAA83618.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sulfatase
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 26      6grp_total > 20      4grp_total > 28      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 131.6
(2)
P 		65.6
(-1.8)
P 		45.8
(-3)
A 		148.3
(3)
P 		103
B 52.9
(-3)
A 		138.5
(3)
P 		83.6
(-0.8)
P 		71
(-1.7)
P 		86
C 79.7
(-3)
A 		102.4
(3)
P 		83.2
(-2.1)
P 		95
(1)
P 		23
avr 88.1
(0) 		102.2
(2.5) 		70.9
(-3) 		104.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 66.4
(-3)
A 		104
(-0.5)
P 		109.6
(-0.1)
P 		155.2
(3)
P 		83.8
(-1.8)
P 		116.1
(0.4)
P 		89
B 102.5
(-0.8)
P 		176.4
(3)
P 		138.9
(1.1)
P 		123.3
(0.3)
P 		105.4
(-0.6)
P 		59.6
(-3)
P 		117
C 73
(-2.5)
M 		159.1
(3)
P 		80.8
(-2)
P 		108.3
(-0.2)
P 		64.9
(-3)
P 		69.4
(-2.7)
P 		94
avr 80.6
(-3) 		146.5
(3) 		109.8
(-0.3) 		128.9
(1.4) 		84.7
(-2.6) 		81.7
(-2.9) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 47.9
(3)
P 		14.2
(-2.6)
P 		12
(-3)
A 		21.7
(-1.4)
P 		36
B 16.9
(-2.4)
A 		34.2
(3)
P 		19.4
(-1.6)
P 		15.1
(-3)
P 		19
C 26.4
(1.6)
A 		29.5
(3)
P 		29
(2.8)
P 		16
(-3)
P 		14
avr 30.4
(3) 		26
(0.9) 		20.1
(-1.8) 		17.6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12.2
(-3)
A 		37
(2.5)
P 		23.9
(-0.4)
P 		39.4
(3)
P 		25.3
(-0.1)
P 		28.3
(0.6)
P 		27
B 35.7
(-0.8)
P 		58.7
(3)
P 		33.7
(-1.1)
P 		32.6
(-1.3)
P 		42.8
(0.4)
P 		22.2
(-3)
P 		37
C 27.1
(-1.6)
M 		48.5
(3)
P 		20.6
(-3)
P 		21.8
(-2.7)
P 		21
(-2.9)
P 		23.2
(-2.4)
P 		28
avr 25
(-2.9) 		48.1
(3) 		26.1
(-2.6) 		31.3
(-1.3) 		29.7
(-1.7) 		24.6
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188572_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18455
Sequence Type Exemplar sequence
Representative Public ID K09C4.8 NCBI
Target Description K09C4.8 /REP_DB=WormBase Gene ID /WP=CE04736 /TR=Q21376 /GB=AAA83618.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sulfatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076159 NCBI Caenorhabditis elegans K09C4.8 (sulfatase) mRNA, complete cds. 11/11 None
GENEFINDER00000004465 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3267370:3270755:-1 11/11 None
K09C4.8 ENSEMBL cdna:known chromosome:CEL140:X:3267356:3270755:-1 gene:K09C4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004455 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3267370-3270756(-) 100.0 100.0
Public Domain and Genome References
Gene Title sulfatase
Gene Symbol sul-1
Ensembl K09C4.8
Entrez Gene 180619 Entrez gene
SwissProt Q21376 EMBL-EBI
WormBase CE04736 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12369.1.S1_S_AT similar to Extracellular sulfatase Sulf-1 precursor (HSulf-1) cfa
CANINE_2:CFAAFFX.12377.1.S1_AT similar to Extracellular sulfatase Sulf-1 precursor (HSulf-1) cfa
HG-U133A_2:212344_AT sulfatase 1 hs
HG-U133_PLUS_2:212344_AT sulfatase 1 hs
HG-U133A:212344_AT sulfatase 1 hs
HU35KSUBB:RC_R51309_AT sulfatase 1 hs
HU35KSUBB:RC_AA121315_AT sulfatase 1 hs
U133_X3P:HS.70823.0.S3_3P_AT sulfatase 1 hs
U133_X3P:HS.70823.0.S2_3P_AT sulfatase 1 hs
U133_X3P:HS.70823.0.S1_3P_AT sulfatase 1 hs
HG-U133A_2:212353_AT sulfatase 1 hs
HG-U133_PLUS_2:212353_AT sulfatase 1 hs
HG-U133A:212353_AT sulfatase 1 hs
HG-U133A_2:212354_AT sulfatase 1 hs
HG-U133_PLUS_2:212354_AT sulfatase 1 hs
HG-U133A:212354_AT sulfatase 1 hs
HG-U95AV2:35832_AT sulfatase 1 hs
HG-U133_PLUS_2:241473_AT Sulfatase 1 hs
HG-U133B:241473_AT Sulfatase 1 hs
HG-U95E:68329_AT Sulfatase 1 hs
HG-U95D:83216_AT Sulfatase 1 hs
U133_X3P:HS.174870.0.A1_3P_AT Sulfatase 1 hs
MG-U74BV2:116019_AT sulfatase 1 mm
MG-U74BV2:113914_AT sulfatase 1 mm
MOE430B:1436319_AT sulfatase 1 mm
MOUSE430_2:1436319_AT sulfatase 1 mm
MOE430B:1438200_AT sulfatase 1 mm
MOUSE430_2:1438200_AT sulfatase 1 mm
MOE430B:1446416_AT sulfatase 1 mm
MOUSE430_2:1446416_AT sulfatase 1 mm
MOE430B:1457402_AT Sulfatase 1, mRNA (cDNA clone MGC:25096 IMAGE:4500954) mm
MOUSE430_2:1457402_AT Sulfatase 1, mRNA (cDNA clone MGC:25096 IMAGE:4500954) mm
MU19KSUBC:TC37791_AT Sulfatase 1, mRNA (cDNA clone MGC:25096 IMAGE:4500954) mm
RAE230A:1375492_AT sulfatase 1 rn
RAT230_2:1375492_AT sulfatase 1 rn
RAE230A:1368771_AT sulfatase 1 rn
RAT230_2:1368771_AT sulfatase 1 rn
RAE230A:1373062_AT Sulfatase 1 rn
RAT230_2:1373062_AT Sulfatase 1 rn
RG-U34B:RC_AI060016_AT Sulfatase 1 rn
RG-U34C:RC_AI071876_AT Sulfatase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8484 sulfuric ester hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83618 Sulfatase domain protein protein 1 [Caenorhabditis elegans] ref|NP_508560.1| K09C4.8 [Caenorhabditis elegans] sp|Q21376|SULF1_CAEEL Putative extracellular sulfatase Sulf-1 homolog precursor (CeSulf-1) 0.0
blast CAE68401 Hypothetical protein CBG14172 [Caenorhabditis briggsae] 0.0
blast XP_615174 PREDICTED: similar to Extracellular sulfatase Sulf-1 precursor (HSulf-1), partial [Bos taurus] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000917 EMBL-EBI Sulfatase 6.2E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508560.1 1 7-29
K09C4.8 1 7-29
GENEFINDER00000004465 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:188572_S_AT
gttgctccagaaatgtttcccatccaataaaacttctagagcagaaaatgtcaaaaaagc
actacttgaagtacaaaaagaaaccgcaaaacggatcattgaaaccaaaagactgctcac
ttccccaaatgaactgcttcacacatactgcatctcactggaaaactccccctctctggc
ctgaggagcttggagagttctgcttttgtcagaattgtaacaataatacatattggtgtt
tacgaaccaaaaacgagacacacaattttttgtattgcgagttcgttacagagtttatca
gtttttacgatttcaacacggatccggaccagttgataaatgccgtatactcgttggata
ttggcgtgcttgagcaacttagcgagcaacttcggaaccttcgaaaatgtaagaatcgac
agtgcgagatatggagcacgtctcaaatgttaagatctccgaagcttgttgacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTCCAGAAATGTTTCCCATCC 685 439 1619 Antisense
GAAACCAAAAGACTGCTCACTTCCC 196 359 1719 Antisense
TCACTTCCCCAAATGAACTGCTTCA 398 627 1735 Antisense
AACTGCTTCACACATACTGCATCTC 556 141 1750 Antisense
TACTGCATCTCACTGGAAAACTCCC 476 647 1764 Antisense
CCCTCTCTGGCCTGAGGAGCTTGGA 663 259 1788 Antisense
GAGCTTGGAGAGTTCTGCTTTTGTC 689 387 1804 Antisense
TACGATTTCAACACGGATCCGGACC 101 647 1924 Antisense
ATACTCGTTGGATATTGGCGTGCTT 475 21 1965 Antisense
GAGCAACTTAGCGAGCAACTTCGGA 414 389 1990 Antisense
AAGATCTCCGAAGCTTGTTGACTTG 589 155 2070 Antisense
Sequence Source Affymetrix Proprietary Database