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[188571_at] chitinase

Description C08H9.12 /REP_DB=WormBase Gene ID /WP=CE02997 /TR=Q17836 /GB=CAA91149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 62      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 9.7
(-1.3)
A 		32.4
(3)
A 		0.9
(-3)
A 		0.7
(-3)
A 		32
B 4.5
(-2.5)
A 		2.9
(-3)
A 		2.9
(-3)
A 		23.3
(3)
A 		20
C 7.4
(0.2)
A 		4.6
(-1.2)
A 		0.9
(-3)
A 		13
(3)
A 		12
avr 7.2
(-0.1) 		13.3
(3) 		1.6
(-3) 		12.3
(2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2.4
(-2.2)
A 		4.2
(-1.5)
A 		0.6
(-3)
A 		14.6
(3)
A 		12.7
(2.2)
A 		2.7
(-2.1)
A 		14
B 1.4
(-2.8)
A 		13
(3)
A 		9.2
(1.1)
A 		0.9
(-3)
A 		5.9
(-0.5)
A 		6.5
(-0.2)
A 		12
C 4.1
(-2.9)
A 		19.9
(-0.3)
A 		39.7
(3)
A 		21.1
(-0.1)
A 		3.5
(-3)
A 		10.3
(-1.9)
A 		36
avr 2.6
(-3) 		12.4
(1.2) 		16.5
(3) 		12.2
(1.1) 		7.4
(-0.9) 		6.5
(-1.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.5
(-0)
A 		7
(3)
A 		0.2
(-2.9)
A 		0.1
(-3)
A 		7
B 1.4
(-2)
A 		0.7
(-3)
A 		0.7
(-3)
A 		5
(3)
A 		4
C 2.5
(3)
A 		1.3
(-0.3)
A 		0.3
(-3)
A 		2.2
(2.2)
A 		2
avr 2.5
(1.8) 		3
(3) 		0.4
(-3) 		2.4
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-2.5)
A 		1.5
(-0.7)
A 		0.1
(-3)
A 		3.7
(2.8)
A 		3.8
(3)
A 		0.7
(-2)
A 		4
B 0.5
(-2.6)
A 		4.3
(3)
A 		2.2
(-0.1)
A 		0.2
(-3)
A 		2.4
(0.2)
A 		2.4
(0.2)
A 		4
C 1.5
(-2.7)
A 		6.1
(0.3)
A 		10.1
(3)
A 		4.2
(-0.9)
A 		1.1
(-3)
A 		3.4
(-1.5)
A 		9
avr 0.8
(-3) 		4
(2.8) 		4.1
(3) 		2.7
(0.5) 		2.4
(-0.1) 		2.2
(-0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3463
Sequence Type Exemplar sequence
Representative Public ID C08H9.12 NCBI
Target Description C08H9.12 /REP_DB=WormBase Gene ID /WP=CE02997 /TR=Q17836 /GB=CAA91149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063725 NCBI Caenorhabditis elegans C08H9.12 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001368 ENSEMBL cdna:SNAP chromosome:CEL140:II:9855847:9856701:-1 11/11 None
GENEFINDER00000001390 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9852296:9866384:-1 11/11 None
C08H9.12 ENSEMBL cdna:known chromosome:CEL140:II:9855847:9857768:-1 gene:C08H9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9855843-9857765(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.12
Entrez Gene 182436 Entrez gene
SwissProt Q17836 EMBL-EBI
WormBase CE02997 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 0.0
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 0.0
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 0.0
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 1.0E-174
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.0E-71
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-10
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.4E-4
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.6E-62
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.9E-14
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.1E-18
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.4E-34
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.6E-22
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.9E-74
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.8E-93
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496126.1 1 31-53
C08H9.12 1 31-53
GENEFINDER00000001390 7 42-64,253-275,594-616,859-881,1214-1236,1628-1650,2060-2082
Sequence
Target Sequence 
>C. ELEGANS:188571_AT
gtcaaccatttatctaatttggtggaattctcaaattttgtcgactttttaaacatttac
ctgtttaatagttttttaaatcaaattggaccagactcaccattgtacggaggaggaagc
agaatcgtcgatgagaatatgaagtattacatttgtaaatctggacagccaagtaaattc
aatataattgtctcgttccacgcaacatattggaacggcgccgaattaccattacgtgat
gattctgatgatatatggaaagataacaactctggaagattaccaattgctttacctcgg
aggcaactacgtcaatacaactggaacctgaccgacattaaatttcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACCATTTATCTAATTTGGTGG 362 463 811 Antisense
TGTCGACTTTTTAAACATTTACCTG 101 543 849 Antisense
GGAGGAGGAAGCAGAATCGTCGATG 500 515 919 Antisense
TACATTTGTAAATCTGGACAGCCAA 252 645 958 Antisense
GCAACATATTGGAACGGCGCCGAAT 637 319 1012 Antisense
ATTGGAACGGCGCCGAATTACCATT 277 3 1019 Antisense
GATAACAACTCTGGAAGATTACCAA 177 423 1072 Antisense
ATTACCAATTGCTTTACCTCGGAGG 446 9 1089 Antisense
TACCTCGGAGGCAACTACGTCAATA 51 649 1103 Antisense
AACTACGTCAATACAACTGGAACCT 345 87 1115 Antisense
AACCTGACCGACATTAAATTTCATA 450 141 1135 Antisense
Sequence Source Affymetrix Proprietary Database