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[188570_at] chitinase

Description R09D1.10 /REP_DB=WormBase Gene ID /WP=CE03552 /TR=Q21866 /GB=CAA93870.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 46      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 398.3
(3)
P 		146.1
(-1.6)
P 		164.1
(-1.2)
P 		66.5
(-3)
P 		332
B 379.8
(3)
P 		178.3
(-0.8)
P 		110
(-2.1)
P 		63.2
(-3)
P 		317
C 355.8
(3)
P 		147.5
(-3)
P 		172.7
(-2.3)
P 		166.5
(-2.5)
P 		208
avr 378
(3) 		157.3
(-1.7) 		148.9
(-1.9) 		98.7
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 336.5
(-2.4)
P 		356.3
(-2)
P 		677.5
(3)
P 		543.2
(0.9)
P 		327.4
(-2.5)
P 		295.3
(-3)
P 		382
B 323.7
(-3)
P 		353.1
(-2.4)
P 		617.1
(3)
P 		558.8
(1.8)
P 		434.5
(-0.7)
P 		418.7
(-1.1)
P 		293
C 270.1
(-3)
P 		445.9
(-0.4)
P 		567.3
(1.5)
P 		668.3
(3)
P 		272.6
(-3)
P 		323.4
(-2.2)
P 		398
avr 310.1
(-3) 		385.1
(-1.6) 		620.6
(3) 		590.1
(2.4) 		344.8
(-2.3) 		345.8
(-2.3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 145
(3)
P 		31.7
(-2)
P 		42.9
(-1.5)
P 		9.7
(-3)
P 		135
B 121.1
(3)
P 		44
(-1.3)
P 		25.5
(-2.3)
P 		13.5
(-3)
P 		108
C 117.8
(3)
P 		42.4
(-2)
P 		60.2
(-0.9)
P 		28.1
(-3)
P 		90
avr 128
(3) 		39.4
(-1.8) 		42.9
(-1.6) 		17.1
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 62
(-3)
P 		126.7
(1.5)
P 		147.6
(3)
P 		137.8
(2.3)
P 		98.8
(-0.4)
P 		71.9
(-2.3)
P 		86
B 112.6
(-3)
P 		117.5
(-2.5)
P 		149.8
(0.5)
P 		148
(0.3)
P 		176.5
(3)
P 		156.1
(1.1)
P 		64
C 100.1
(-1.7)
P 		136.1
(2.1)
P 		144.4
(3)
P 		134.4
(1.9)
P 		88.2
(-3)
P 		108.3
(-0.9)
P 		56
avr 91.6
(-3) 		126.8
(0.8) 		147.3
(3) 		140.1
(2.2) 		121.2
(0.2) 		112.1
(-0.8) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2798
Sequence Type Exemplar sequence
Representative Public ID R09D1.10 NCBI
Target Description R09D1.10 /REP_DB=WormBase Gene ID /WP=CE03552 /TR=Q21866 /GB=CAA93870.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063630 NCBI Caenorhabditis elegans R09D1.10 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010211 ENSEMBL cdna:SNAP chromosome:CEL140:II:9464496:9465841:-1 11/11 None
R09D1.10 ENSEMBL cdna:known chromosome:CEL140:II:9464445:9466104:-1 gene:R09D1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9464492-9465838(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.10
Entrez Gene 187738 Entrez gene
SwissProt Q21866 EMBL-EBI
WormBase CE32917 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 0.0
blast CAB05568 Hypothetical protein M01B2.6 [Caenorhabditis elegans] ref|NP_506770.2| M01B2.6 [Caenorhabditis elegans] 1.0E-115
blast CAA93866 Hypothetical protein R09D1.6 [Caenorhabditis elegans] ref|NP_496026.1| R09D1.6 [Caenorhabditis elegans] 1.0E-105
blast CAB05568 Hypothetical protein M01B2.6 [Caenorhabditis elegans] ref|NP_506770.2| M01B2.6 [Caenorhabditis elegans] 1.0E-100
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 6.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.7E-9
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.2E-79
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.0E-109
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496031.2 1 37-59
R09D1.10 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:188570_AT
taatccaacaggaccgatttccccaatttacaatggagcacaaggaagagaagcatacaa
cgttcatagctcagctctcacgtactcttgcaaagtgaaacaatcaaaaaaattcaatat
cgtgatcccgttttttgcaaggctctggaaaaacgtcgaaaaaccgattcagcatccggg
gagagaggtttataggaacgttcatcttgttcacggttcggcagttggagaaagttttat
gtccagaaaatctgtacttgaaaagggatacaaactgaactcgtatagttatgatgaatt
atcaagatctgcatttatctacaattcgacaacaaaagaatatcttacttttgaaacaga
aaaaagtattgaggctaaagtgaattacgtaaaagacagagctttggctggtgtttggat
atggtttgtcgacttggatgatgaagaaaatagtttaatcaatgcagtcaattttactgg
tttatgcagtagtggggacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCAACAGGACCGATTTCCCCA 174 631 603 Antisense
GACCGATTTCCCCAATTTACAATGG 599 377 614 Antisense
ATACAACGTTCATAGCTCAGCTCTC 360 25 657 Antisense
AGCTCTCACGTACTCTTGCAAAGTG 511 79 675 Antisense
AATTCAATATCGTGATCCCGTTTTT 575 175 713 Antisense
TGATCCCGTTTTTTGCAAGGCTCTG 13 565 725 Antisense
AAACCGATTCAGCATCCGGGGAGAG 406 123 763 Antisense
TTCATCTTGTTCACGGTTCGGCAGT 379 687 803 Antisense
GAGCTTTGGCTGGTGTTTGGATATG 207 389 1001 Antisense
TGGATATGGTTTGTCGACTTGGATG 596 545 1018 Antisense
TGGTTTATGCAGTAGTGGGGACACA 550 551 1080 Antisense
Sequence Source Affymetrix Proprietary Database