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[188569_at] 7TM chemoreceptor, sra family

Description F44F4.13 /REP_DB=WormBase Gene ID /WP=CE01586 /GEN=sra-11 /TR=SW:Q20411 /GB=CAA85461.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 14      6grp_cgc > 80      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 55
(-0.3)
P 		14
(-3)
A 		22.5
(-2.4)
A 		103.9
(3)
P 		90
B 76.8
(2.8)
P 		30.5
(-1.3)
A 		11.8
(-3)
A 		78.8
(3)
P 		67
C 58.7
(1.9)
P 		10.2
(-3)
A 		33.9
(-0.6)
A 		69.8
(3)
P 		60
avr 63.5
(1.1) 		18.2
(-3) 		22.7
(-2.6) 		84.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 50.9
(2.9)
A 		51.7
(3)
A 		47.9
(2.5)
A 		6.2
(-3)
A 		43.2
(1.9)
P 		32.4
(0.5)
A 		46
B 53.7
(3)
P 		44.1
(1.2)
P 		53.8
(3)
P 		36.6
(-0.2)
P 		45.5
(1.5)
P 		21.3
(-3)
A 		33
C 39.3
(3)
A 		29
(0.5)
A 		32.5
(1.3)
P 		14.8
(-3)
A 		21.3
(-1.4)
A 		20.4
(-1.6)
A 		25
avr 48
(3) 		41.6
(1.7) 		44.7
(2.3) 		19.2
(-3) 		36.7
(0.6) 		24.7
(-1.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20
(3)
P 		3
(-3)
A 		5.9
(-2)
A 		15.2
(1.3)
P 		17
B 24.5
(3)
P 		7.5
(-1.7)
A 		2.7
(-3)
A 		16.8
(0.9)
P 		22
C 19.4
(3)
P 		2.9
(-3)
A 		11.8
(0.2)
A 		11.8
(0.2)
P 		17
avr 21.3
(3) 		4.5
(-3) 		6.8
(-2.2) 		14.6
(0.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.4
(-0.2)
A 		18.4
(3)
A 		10.4
(0.1)
A 		1.6
(-3)
A 		13
(1.1)
P 		7.9
(-0.8)
A 		17
B 18.7
(3)
P 		14.7
(0.8)
P 		13.1
(-0.1)
P 		9.7
(-2)
P 		18.5
(2.9)
P 		7.9
(-3)
A 		11
C 14.6
(3)
A 		8.9
(0.1)
A 		8.3
(-0.3)
P 		3
(-3)
A 		6.9
(-1)
A 		6.8
(-1)
A 		12
avr 14.2
(3) 		14
(2.9) 		10.6
(0.7) 		4.8
(-3) 		12.8
(2.1) 		7.5
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3074
Sequence Type Exemplar sequence
Representative Public ID F44F4.13 NCBI
Target Description F44F4.13 /REP_DB=WormBase Gene ID /WP=CE01586 /GEN=sra-11 /TR=SW:Q20411 /GB=CAA85461.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063947 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-11) (sra-11) mRNA, complete cds. 11/11 None
SNAP00000037186 ENSEMBL cdna:SNAP chromosome:CEL140:II:10908719:10910230:-1 11/11 None
F44F4.13 ENSEMBL cdna:known chromosome:CEL140:II:10908719:10910230:-1 gene:F44F4.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037191 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10908715-10910227(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-11
Ensembl F44F4.13
Entrez Gene 191782 Entrez gene
SwissProt Q20411 EMBL-EBI
WormBase CE33395 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85461 Hypothetical protein F44F4.13 [Caenorhabditis elegans] ref|NP_496348.2| Serpentine Receptor, class A (alpha) family member (sra-11) [Caenorhabditis elegans] sp|Q20411|SRA11_CAEEL Serpentine receptor class alpha-11 (Protein sra-11) prf||2123261L chemosensory receptor 0.0
blast CAE73231 Hypothetical protein CBG20639 [Caenorhabditis briggsae] 1.0E-131
blast CAA91390 Hypothetical protein F49E12.5a [Caenorhabditis elegans] ref|NP_001022186.1| Serpentine Receptor, class A (alpha) family member (sra-13) [Caenorhabditis elegans] sp|Q20618|SRA13_CAEEL Serpentine receptor class alpha-13 (Protein sra-13) 5.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496348.2 6 21-43,58-80,144-166,193-215,241-263,278-300
F44F4.13 6 21-43,58-80,144-166,193-215,241-263,278-300
SNAP00000037186 6 21-43,58-80,144-166,193-215,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:188569_AT
gatcgcatgcaattacgctaacgtacaaatcatattctggggagatccactgacggaata
cgtgccaacttgtggacaattcccatcgaaatctgttaacagattccaaacatttctagc
cattgcactttatatgtcaattgctcatatggtaataaatgtaattattctttacattaa
tgttctacaggatcgacagcagaggttggtgtcaacaagtactgaaagtaaatcgtttaa
cgttaatcagagatatcagtctagagaagcattgaaatcttcacaagcgattttcttcct
ttcaatgtcgcagttttttgcatgcctgatatattcggtctttacaaaagtgtttctgga
atttcagctcaatctttccccgttacaatctggtctggtcttggcactgagctatacaac
accatacgcttgcattgcaattccatcgcttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGCATGCAATTACGCTAACGTA 260 417 471 Antisense
GACGGAATACGTGCCAACTTGTGGA 502 375 522 Antisense
CAAACATTTCTAGCCATTGCACTTT 163 191 577 Antisense
TTTTCTTCCTTTCAATGTCGCAGTT 171 677 761 Antisense
GTCGCAGTTTTTTGCATGCCTGATA 364 475 777 Antisense
ATGCCTGATATATTCGGTCTTTACA 608 41 792 Antisense
TGGAATTTCAGCTCAATCTTTCCCC 393 545 827 Antisense
CCCGTTACAATCTGGTCTGGTCTTG 648 237 849 Antisense
GTCTGGTCTTGGCACTGAGCTATAC 149 471 863 Antisense
TACAACACCATACGCTTGCATTGCA 295 643 885 Antisense
TTGCATTGCAATTCCATCGCTTATA 507 701 900 Antisense
Sequence Source Affymetrix Proprietary Database