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[188568_at] peptidase

Description C02G6.2 /REP_DB=WormBase Gene ID /WP=CE06756 /TR=Q17593 /GB=AAA98002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 50      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 24.8
(-2.2)
A 		17
(-3)
A 		39.7
(-0.7)
A 		76.4
(3)
A 		59
B 31.2
(-2.1)
A 		24.7
(-3)
A 		69.1
(3)
A 		50
(0.4)
A 		44
C 43.8
(-2)
A 		56.4
(0.2)
P 		37.6
(-3)
A 		73.4
(3)
P 		36
avr 33.3
(-2.9) 		32.7
(-3) 		48.8
(-0.2) 		66.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 54.2
(3)
A 		30.4
(-2.1)
M 		46.1
(1.3)
P 		32
(-1.7)
A 		37
(-0.7)
A 		26.1
(-3)
A 		28
B 35.1
(2.5)
A 		26.9
(1.2)
A 		26
(1)
A 		38
(3)
A 		1.7
(-3)
A 		8.7
(-1.8)
A 		36
C 20.7
(-1.3)
A 		25.4
(-0.5)
A 		18.3
(-1.7)
A 		47.3
(3)
A 		28.1
(-0.1)
A 		10
(-3)
A 		37
avr 36.7
(2.4) 		27.6
(0.1) 		30.1
(0.8) 		39.1
(3) 		22.3
(-1.2) 		14.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(1.2)
A 		3.7
(-3)
A 		10.4
(2.4)
A 		11.2
(3)
A 		8
B 10
(-0.6)
A 		6.1
(-3)
A 		16
(3)
A 		10.7
(-0.2)
A 		10
C 14.5
(0.3)
A 		16.2
(3)
P 		13.1
(-1.9)
A 		12.4
(-3)
P 		4
avr 11.2
(0.3) 		8.7
(-3) 		13.2
(3) 		11.4
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10
(1.5)
A 		10.8
(2.5)
M 		10
(1.5)
P 		8.1
(-0.9)
A 		11.2
(3)
A 		6.4
(-3)
A 		5
B 12.2
(3)
A 		9
(1.3)
A 		6.3
(-0.1)
A 		10.1
(1.9)
A 		0.7
(-3)
A 		3.2
(-1.7)
A 		12
C 7.7
(1.3)
A 		7.7
(1.3)
A 		4.7
(-1.6)
A 		9.5
(3)
A 		9.1
(2.6)
A 		3.3
(-3)
A 		6
avr 10
(3) 		9.2
(2.2) 		7
(-0.2) 		9.2
(2.2) 		7
(-0.2) 		4.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11330
Sequence Type Exemplar sequence
Representative Public ID C02G6.2 NCBI
Target Description C02G6.2 /REP_DB=WormBase Gene ID /WP=CE06756 /TR=Q17593 /GB=AAA98002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072130(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072130 NCBI Caenorhabditis elegans C02G6.2 (peptidase) mRNA, complete cds. 10/11 None
SNAP00000041301 ENSEMBL cdna:SNAP chromosome:CEL140:V:5874678:5877974:1 10/11 None
C02G6.2 ENSEMBL cdna:known chromosome:CEL140:V:5874678:5877508:1 gene:C02G6.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041304 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5874677-5877534(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl C02G6.2
Entrez Gene 182128 Entrez gene
SwissProt Q17593 EMBL-EBI
WormBase CE35214 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98002 Hypothetical protein C02G6.2 [Caenorhabditis elegans] ref|NP_504531.2| C02G6.2 [Caenorhabditis elegans] 0.0
blast AAT92074 Hypothetical protein F44E7.4d [Caenorhabditis elegans] ref|NP_001023928.1| F44E7.4d [Caenorhabditis elegans] 0.0
blast AAO12429 Hypothetical protein F44E7.4c [Caenorhabditis elegans] ref|NP_504514.2| F44E7.4c [Caenorhabditis elegans] 0.0
blast AAC25789 Hypothetical protein F44E7.4a [Caenorhabditis elegans] ref|NP_741543.1| F44E7.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.1E-28
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.1E-11
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.9E-56
Sequence
Target Sequence 
>C. ELEGANS:188568_AT
tcgacgttgtatttgaatcccttaagagatctttaacaaatcacgcattctctcaacctt
atatgctctctaaatatttcaatgagcttctcgtcgtcgaaaaggtttggagcaaagagc
aactgcttgcagtctgtgatagtgccaccttggaggatgttcaaggattttcgaaagaat
tgtttcaagcattccatctggaactctttgtccatggcaattctactgaaaaaaaagcaa
ttcaattgtcaaacgaattgatggatattctcaaatcagctgcaccgaattctcgcttac
tgtatcgtaatgagcacaatccacgtcgcgagttccaactgaacaatggggatgaataca
tctacagacatcttcaaaagactcatgatgccggatgcgttgaagtgacttttaaatttg
gtgtccagaatacttacgacaatgctctcgctggtctgatcagtcaactcatccggcaac
cagctttcagtaccctaagaacaaaagaaagcctaggtaagaacagttatccccatctaa
tcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACGTTGTATTTGAATCCCTTAA 537 601 1934 Antisense
TTCTCTCAACCTTATATGCTCTCTA 301 693 1981 Antisense
GCTTCTCGTCGTCGAAAAGGTTTGG 316 303 2019 Antisense
GAGCAAAGAGCAACTGCTTGCAGTC 274 391 2043 Antisense
GCTTGCAGTCTGTGATAGTGCCACC 590 305 2058 Antisense
GATAGTGCCACCTTGGAGGATGTTC 273 425 2071 Antisense
AATTGTTTCAAGCATTCCATCTGGA 175 179 2111 Antisense
TACTTACGACAATGCTCTCGCTGGT 334 643 2364 Antisense
CTGGTCTGATCAGTCAACTCATCCG 603 239 2384 Antisense
ACCAGCTTTCAGTACCCTAAGAACA 626 85 2412 Antisense
AGAACAGTTATCCCCATCTAATCAA 290 73 2453 Antisense
Sequence Source Affymetrix Proprietary Database