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[188567_at] chitinase

Description C08H9.13 /REP_DB=WormBase Gene ID /WP=CE02998 /TR=Q17839 /GB=CAA91152.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 73      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 3.4
(-3)
A 		23.7
(-1.8)
A 		29
(-1.4)
A 		101.3
(3)
P 		98
B 16.4
(-3)
A 		20.2
(-2.2)
A 		18.2
(-2.6)
A 		45
(3)
P 		29
C 15.4
(-1.6)
A 		5.9
(-3)
A 		6.2
(-3)
A 		47.4
(3)
P 		42
avr 11.7
(-3) 		16.6
(-2.4) 		17.8
(-2.3) 		64.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 27.9
(-1.4)
A 		22.6
(-2.5)
A 		49.9
(3)
A 		25.1
(-2)
A 		20
(-3)
A 		26.1
(-1.8)
A 		30
B 22.6
(-2.6)
A 		32.6
(-0.9)
A 		20.2
(-3)
A 		24.8
(-2.2)
A 		55.1
(3)
P 		28.6
(-1.6)
A 		35
C 1.7
(-3)
A 		42.7
(3)
A 		28.1
(0.9)
A 		35.3
(1.9)
A 		29.3
(1)
A 		31.5
(1.4)
A 		41
avr 17.4
(-3) 		32.6
(2.2) 		32.7
(2.3) 		28.4
(0.8) 		34.8
(3) 		28.7
(0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		5.1
(-1.3)
A 		7.6
(-0.2)
A 		14.8
(3)
P 		14
B 5.2
(-1.9)
A 		5
(-2.1)
A 		4.2
(-3)
A 		9.6
(3)
P 		5
C 5.1
(0.2)
A 		1.7
(-3)
A 		2.2
(-2.5)
A 		8
(3)
P 		6
avr 3.8
(-3) 		3.9
(-2.9) 		4.7
(-2.2) 		10.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.1
(-3)
A 		8.1
(0.1)
A 		10.9
(3)
A 		6.4
(-1.7)
A 		6
(-2.1)
A 		6.4
(-1.7)
A 		6
B 7.9
(-2)
A 		10.9
(-0.9)
A 		4.9
(-3)
A 		6.6
(-2.4)
A 		22.4
(3)
P 		10.7
(-1)
A 		18
C 0.6
(-3)
A 		13
(3)
A 		7.1
(0.1)
A 		7.1
(0.1)
A 		9.5
(1.3)
A 		10.5
(1.8)
A 		12
avr 4.5
(-3) 		10.7
(1.6) 		7.6
(-0.7) 		6.7
(-1.4) 		12.6
(3) 		9.2
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2999
Sequence Type Exemplar sequence
Representative Public ID C08H9.13 NCBI
Target Description C08H9.13 /REP_DB=WormBase Gene ID /WP=CE02998 /TR=Q17839 /GB=CAA91152.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063730 NCBI Caenorhabditis elegans C08H9.13 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001374 ENSEMBL cdna:SNAP chromosome:CEL140:II:9869367:9871358:-1 11/11 None
GENEFINDER00000001383 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9866559:9871083:-1 11/11 None
C08H9.13 ENSEMBL cdna:known chromosome:CEL140:II:9869367:9871083:-1 gene:C08H9.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9869363-9871080(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.13
Entrez Gene 182437 Entrez gene
SwissProt Q17839 EMBL-EBI
WormBase CE02998 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91152 Hypothetical protein C08H9.13 [Caenorhabditis elegans] ref|NP_496131.1| C08H9.13 [Caenorhabditis elegans] 0.0
blast CAA91146 Hypothetical protein C08H9.5 [Caenorhabditis elegans] ref|NP_496130.1| Overexpression Longevity Determinant family member (old-1) [Caenorhabditis elegans] 0.0
blast CAA90147 Hypothetical protein ZK938.5 [Caenorhabditis elegans] ref|NP_496123.1| Overexpression Longevity Determinant family member (old-2) [Caenorhabditis elegans] 0.0
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 9.0E-89
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 1.0E-88
blast NP_504806 T01C4.1 [Caenorhabditis elegans] gb|AAB09177.1| Hypothetical protein T01C4.1 [Caenorhabditis elegans] 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-110
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-52
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-110
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496131.1 1 32-54
C08H9.13 1 32-54
SNAP00000001374 2 15-37,88-110
GENEFINDER00000001383 3 31-53,510-532,562-584
Sequence
Target Sequence 
>C. ELEGANS:188567_AT
attacctcagaatggatggactccttcactatgtagattttttgaatgttctcacatatg
gatactatgcaccatggagtggagtgaatggaaagtttgttggacctaatgccccgttat
atggaggtaatagagaaaatgttgatgaaacaatgcaatacttgatatgtaaaacaagga
ctccaagtaaactaaacatggcactctctttttacggaagatattgggagaatgtgaatg
acaatgtgccagatgaaatgtttaaggaagcggatttaataaatggtaaagcacaaggaa
tgtttgttgcttggaagaacctagctggtagaggatgggataaatcagaagctttgtggc
atgaagaaactcagatcccttatatttggaacagcgaggagaggaaattctttgtattcg
aaaatgaacgaagtctgcaagcgaaaatggattacgcagcagatcataatattggcggag
tgtatatatgggcattgggagccgatgataacaatgatactttattaaatgtggtttcat
ctgcagattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACCTCAGAATGGATGGACTCCT 110 13 797 Antisense
GGATGGACTCCTTCACTATGTAGAT 489 515 810 Antisense
GGATACTATGCACCATGGAGTGGAG 637 509 856 Antisense
ATGGAAAGTTTGTTGGACCTAATGC 673 33 884 Antisense
GACCTAATGCCCCGTTATATGGAGG 510 381 899 Antisense
GTAAACTAAACATGGCACTCTCTTT 492 461 983 Antisense
ACATGGCACTCTCTTTTTACGGAAG 271 95 992 Antisense
AGAAACTCAGATCCCTTATATTTGG 313 73 1161 Antisense
GGCGGAGTGTATATATGGGCATTGG 413 541 1270 Antisense
TGGGCATTGGGAGCCGATGATAACA 185 551 1285 Antisense
AAATGTGGTTTCATCTGCAGATTTA 85 121 1323 Antisense
Sequence Source Affymetrix Proprietary Database