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[188566_at]

Description K07A3.3 /REP_DB=WormBase Gene ID /WP=CE23855 /TR=Q9N5J8 /GB=AAF39912.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chaperone
Cluster 6grp_total > 67      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(-2.9)
A 		2.4
(-3)
A 		10
(3)
A 		6.2
(0)
A 		8
B 2.4
(-3)
A 		4.7
(3)
A 		3.8
(0.7)
A 		2.5
(-2.7)
A 		2
C 2.5
(-3)
A 		2.9
(-2.7)
A 		4.6
(-1.3)
A 		10.1
(3)
A 		8
avr 2.5
(-3) 		3.3
(-1.7) 		6.1
(2.7) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		2.3
(-3)
A 		9.2
(-0.4)
A 		2.7
(-2.9)
A 		9.2
(-0.4)
A 		18.5
(3)
A 		16
B 1.8
(-3)
A 		4.2
(-1.5)
A 		3.9
(-1.7)
A 		6
(-0.4)
A 		7.8
(0.7)
A 		11.6
(3)
A 		10
C 5.2
(-2.6)
A 		2.7
(-3)
A 		17.2
(-0.9)
A 		7.5
(-2.3)
A 		3.9
(-2.8)
A 		44.2
(3)
A 		42
avr 3.4
(-2.9) 		3.1
(-3) 		10.1
(-1.1) 		5.4
(-2.4) 		7
(-1.9) 		24.8
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-1.9)
A 		0.5
(-3)
A 		2.6
(3)
A 		0.9
(-1.9)
A 		2
B 0.8
(-0.4)
A 		1.2
(3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		1
C 0.8
(-3)
A 		0.8
(-3)
A 		1.6
(2.3)
A 		1.7
(3)
A 		1
avr 0.8
(-3) 		0.8
(-3) 		1.7
(3) 		1
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.8
(-2.7)
A 		2
(-0.8)
A 		0.7
(-2.8)
A 		2.8
(0.4)
A 		4.5
(3)
A 		4
B 0.6
(-3)
A 		1.4
(-1.7)
A 		0.9
(-2.5)
A 		1.6
(-1.4)
A 		3.2
(1.2)
A 		4.3
(3)
A 		4
C 1.9
(-2.5)
A 		0.8
(-3)
A 		4.4
(-1.5)
A 		1.5
(-2.7)
A 		1.3
(-2.8)
A 		14.8
(3)
A 		14
avr 1
(-3) 		1
(-3) 		2.4
(-1.8) 		1.3
(-2.7) 		2.4
(-1.8) 		7.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.255
Sequence Type Exemplar sequence
Representative Public ID K07A3.3 NCBI
Target Description K07A3.3 /REP_DB=WormBase Gene ID /WP=CE23855 /TR=Q9N5J8 /GB=AAF39912.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chaperone
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026391(11), NM_001026390(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026391 NCBI Caenorhabditis elegans K07A3.3b (chaperone) mRNA, complete cds. 11/11 None
NM_001026390 NCBI Caenorhabditis elegans K07A3.3a (chaperone) mRNA, complete cds. 10/11 None
SNAP00000015259 ENSEMBL cdna:SNAP chromosome:CEL140:I:2587742:2603567:1 11/11 None
GENEFINDER00000015265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2599990:2602628:1 11/11 None
K07A3.3b ENSEMBL cdna:known chromosome:CEL140:I:2599980:2602628:1 gene:K07A3.3 11/11 None
K07A3.3a ENSEMBL cdna:known chromosome:CEL140:I:2599990:2602603:1 gene:K07A3.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2599989-2602628(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20843 Hypothetical protein K07A3.3b [Caenorhabditis elegans] ref|NP_001021562.1| K07A3.3b [Caenorhabditis elegans] 0.0
blast CAE60540 Hypothetical protein CBG04167 [Caenorhabditis briggsae] 0.0
blast AAF39912 Hypothetical protein K07A3.3a [Caenorhabditis elegans] ref|NP_001021561.1| K07A3.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 3.5E-11
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 3.3E-15
Sequence
Target Sequence 
>C. ELEGANS:188566_AT
taacattttgttcatcgcatccggagcattctcgaatatcgagcatatcgttgcgagacg
gatggataagagaagccttggcttcctatccgcaacttccccgcacaaacttggcgacca
ggatacgacggaaaagcttcgtgattcggatgaagagatcgtctcgaaagccagaaatga
aatgattaagcagtgtgatcaaggggatctcatatcattcgggatgatcccggaacttgt
cggccgcttccctgtcattgttcccttccactgccttgacaagacccacctgatgtcggt
gctcacggagcccagaggaagtctgattgctcaaacaaaaaagttttttgaaaatgagaa
tgtggagctgagattttctccggcggctattgaagcgattgccgagatggcggtgaagag
aaaaaccggcgcacgagcattgaaaagtattgtggagaaagcagtgatgaatgcgaagta
cgaggtgcctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACATTTTGTTCATCGCATCCGGA 511 639 975 Antisense
ATCGCATCCGGAGCATTCTCGAATA 182 37 988 Antisense
AGAGAAGCCTTGGCTTCCTATCCGC 358 69 1043 Antisense
CCCCGCACAAACTTGGCGACCAGGA 443 259 1073 Antisense
AGGGGATCTCATATCATTCGGGATG 518 55 1176 Antisense
CGGGATGATCCCGGAACTTGTCGGC 287 243 1194 Antisense
CAAGACCCACCTGATGTCGGTGCTC 39 125 1254 Antisense
GCTCACGGAGCCCAGAGGAAGTCTG 74 301 1275 Antisense
GAGATTTTCTCCGGCGGCTATTGAA 60 397 1344 Antisense
GAAAAACCGGCGCACGAGCATTGAA 310 355 1394 Antisense
AATGCGAAGTACGAGGTGCCTGGAT 330 165 1444 Antisense
Sequence Source Affymetrix Proprietary Database