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[188565_at] 7TM chemoreceptor, srg family

Description C18F10.6 /REP_DB=WormBase Gene ID /WP=CE02491 /GEN=srg-3 /TR=SW:P46572 /GB=AAC47055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 03      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 15.5
(-1.3)
A 		1.6
(-3)
A 		3.7
(-2.7)
A 		49.6
(3)
A 		48
B 8.1
(0.1)
A 		6.1
(-2.7)
A 		5.9
(-3)
A 		10.1
(3)
A 		4
C 5.1
(-2.7)
A 		6.8
(-2.5)
A 		3.5
(-3)
A 		40.6
(3)
A 		37
avr 9.6
(-1.9) 		4.8
(-2.9) 		4.4
(-3) 		33.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.9
(-0.9)
A 		4.9
(-2.5)
A 		21.9
(3)
A 		5.3
(-2.3)
A 		7.5
(-1.6)
A 		3.2
(-3)
A 		19
B 4.3
(1)
A 		5.6
(3)
A 		3.9
(0.4)
A 		4.8
(1.8)
A 		1.7
(-3)
A 		2.3
(-2.1)
A 		4
C 2.6
(-2.8)
A 		26.2
(3)
A 		3.7
(-2.5)
A 		8.3
(-1.4)
A 		1.8
(-3)
A 		2.8
(-2.8)
A 		24
avr 5.6
(-1.2) 		12.2
(3) 		9.8
(1.5) 		6.1
(-0.9) 		3.7
(-2.4) 		2.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.6
(1.5)
A 		0.3
(-3)
A 		1
(-2.4)
A 		7.3
(3)
A 		7
B 2.6
(3)
A 		1.5
(-2.5)
A 		1.4
(-3)
A 		2.2
(1)
A 		1
C 1.7
(-2.5)
A 		2
(-2.1)
A 		1.2
(-3)
A 		6.8
(3)
A 		6
avr 3.3
(-0) 		1.3
(-2.9) 		1.2
(-3) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.8
(-1.5)
A 		1.8
(-1.5)
A 		4.8
(3)
A 		1.3
(-2.3)
A 		2.3
(-0.8)
A 		0.8
(-3)
A 		4
B 1.5
(1.4)
A 		1.8
(3)
A 		0.9
(-1.9)
A 		1.3
(0.3)
A 		0.7
(-3)
A 		0.9
(-1.9)
A 		1
C 1
(-2.7)
A 		8
(3)
A 		0.9
(-2.8)
A 		1.7
(-2.1)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		7
avr 1.4
(-2) 		3.9
(3) 		2.2
(-0.4) 		1.4
(-2) 		1.2
(-2.4) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7344
Sequence Type Exemplar sequence
Representative Public ID C18F10.6 NCBI
Target Description C18F10.6 /REP_DB=WormBase Gene ID /WP=CE02491 /GEN=srg-3 /TR=SW:P46572 /GB=AAC47055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065971 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-3) (srg-3) mRNA, complete cds. 11/11 None
GENEFINDER00000044247 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6266449:6270115:-1 11/11 None
C18F10.6 ENSEMBL cdna:known chromosome:CEL140:III:6269020:6270316:-1 gene:C18F10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6269018-6270315(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-3
Ensembl C18F10.6
Entrez Gene 191829 Entrez gene
SwissProt P46572 EMBL-EBI
WormBase CE02491 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47055 Serpentine receptor, class g (gamma) protein 3 [Caenorhabditis elegans] ref|NP_498372.1| Serpentine Receptor, class G (gamma) family member (srg-3) [Caenorhabditis elegans] sp|P46572|SRG3_CAEEL Serpentine receptor class gamma-3 (Protein srg-3) 1.0E-163
blast 2123261AC chemosensory receptor 1.0E-159
blast AAC47059 Serpentine receptor, class g (gamma) protein 7 [Caenorhabditis elegans] ref|NP_498371.1| Serpentine Receptor, class G (gamma) family member (srg-7) [Caenorhabditis elegans] sp|P54129|SRG7_CAEEL Serpentine receptor class gamma-7 (Protein srg-7) 1.0E-125
blast 2123261AG chemosensory receptor 1.0E-122
blast AAC47055 Serpentine receptor, class g (gamma) protein 3 [Caenorhabditis elegans] ref|NP_498372.1| Serpentine Receptor, class G (gamma) family member (srg-3) [Caenorhabditis elegans] sp|P46572|SRG3_CAEEL Serpentine receptor class gamma-3 (Protein srg-3) 1.0E-112
blast CAE70730 Hypothetical protein CBG17474 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 4.7E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498372.1 7 20-42,62-84,99-121,142-162,182-204,225-247,262-284
C18F10.6 7 20-42,62-84,99-121,142-162,182-204,225-247,262-284
GENEFINDER00000044247 11 34-56,77-96,116-138,159-181,196-215,279-301,311-333,363-383,403-425,446-468,483-502
Sequence
Target Sequence 
>C. ELEGANS:188565_AT
gcttattgttattttcttggcaccatttctagttatttggaacgttcttatcagtgataa
ttttattggttatgttaacggaggttttggaataagctatacaagaagggtgacatgggc
ttcactatcacttatgcaattcaccttaataattctaactgtattgattacaatggtgac
aactacagtaacattttataaaatgacaacgatgaaaaagagaattaaagcttccgaaag
agcactgtgtatagcagctgcattaatatctgtcggatttttactagaagcaattacgca
gagtttctttgcatttttcaaagaagctccttggttgctcgatgttatgaactatctacg
atttgcaactatggatattttgtttgtcggttcccctctcgtcctccttttggtgagtga
tcaattccgaggtcacgtgctcggttcaagaatcggaagaactcaacgtgtatcttccat
caataatactcattctcatattcatcataacactcatcatacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATTGTTATTTTCTTGGCACCA 415 305 447 Antisense
TCTTGGCACCATTTCTAGTTATTTG 72 619 461 Antisense
GGGTGACATGGGCTTCACTATCACT 674 497 554 Antisense
CACTATCACTTATGCAATTCACCTT 587 195 569 Antisense
GAGCACTGTGTATAGCAGCTGCATT 482 389 686 Antisense
AAGAAGCTCCTTGGTTGCTCGATGT 139 153 767 Antisense
TCTCGTCCTCCTTTTGGTGAGTGAT 483 611 843 Antisense
TGATCAATTCCGAGGTCACGTGCTC 528 565 864 Antisense
GTCACGTGCTCGGTTCAAGAATCGG 593 463 878 Antisense
AACTCAACGTGTATCTTCCATCAAT 75 141 906 Antisense
ATTCATCATAACACTCATCATACTA 652 11 946 Antisense
Sequence Source Affymetrix Proprietary Database