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[188563_s_at]

Description C23G10.1 /REP_DB=WormBase Gene ID /WP=CE27721 /GB=AAF99871.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster 6grp_total > 89      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.8
(3)
A 		2.1
(-2.1)
A 		2.8
(-0)
A 		1.8
(-3)
A 		2
B 16.9
(3)
A 		4.6
(-1.6)
A 		0.9
(-3)
A 		1.9
(-2.6)
A 		16
C 3.3
(-2.5)
A 		23.4
(3)
A 		1.5
(-3)
A 		11.4
(-0.3)
A 		22
avr 8
(1.6) 		10
(3) 		1.7
(-3) 		5
(-0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 11.1
(-2)
A 		17.9
(-1.3)
A 		24.6
(-0.7)
A 		1.7
(-3)
A 		60.6
(3)
P 		50.1
(1.9)
P 		59
B 21.7
(0.7)
A 		24.1
(1.1)
A 		0.8
(-3)
A 		9.4
(-1.5)
A 		25.5
(1.3)
A 		34.9
(3)
P 		34
C 11.1
(-2.3)
A 		22.9
(-1.4)
A 		2.1
(-3)
A 		5
(-2.8)
A 		31.2
(-0.8)
A 		82
(3)
P 		80
avr 14.6
(-1.9) 		21.6
(-1.1) 		9.2
(-2.5) 		5.4
(-3) 		39.1
(1) 		55.7
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(3)
A 		0.4
(-2.5)
A 		0.7
(-0.8)
A 		0.3
(-3)
A 		1
B 5.4
(3)
A 		1.1
(-2)
A 		0.2
(-3)
A 		0.4
(-2.8)
A 		5
C 1.1
(-2.4)
A 		6.7
(3)
A 		0.5
(-3)
A 		1.9
(-1.6)
A 		6
avr 2.6
(2.7) 		2.7
(3) 		0.5
(-3) 		0.9
(-1.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2
(-2.5)
A 		6.4
(-1)
A 		5.4
(-1.3)
A 		0.4
(-3)
A 		18.3
(3)
P 		12.2
(1)
P 		18
B 7.5
(0.4)
A 		8
(0.7)
A 		0.2
(-3)
A 		2.5
(-1.9)
A 		10.4
(1.8)
A 		13
(3)
P 		13
C 4.1
(-2.2)
A 		7
(-1.6)
A 		0.5
(-3)
A 		1
(-2.9)
A 		10.1
(-0.9)
A 		27.4
(3)
P 		27
avr 4.5
(-1.8) 		7.1
(-0.9) 		2
(-2.7) 		1.3
(-3) 		12.9
(1.3) 		17.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188563_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7005
Sequence Type Exemplar sequence
Representative Public ID C23G10.1 NCBI
Target Description C23G10.1 /REP_DB=WormBase Gene ID /WP=CE27721 /GB=AAF99871.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065950(11), NM_065951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065950 NCBI Caenorhabditis elegans C23G10.1b (C23G10.1) mRNA, complete cds. 11/11 A 
NM_065951 NCBI Caenorhabditis elegans C23G10.1a (C23G10.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000025641 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6210639:6212766:1 10/11 None
SNAP00000025623 ENSEMBL cdna:SNAP chromosome:CEL140:III:6211629:6212766:1 11/11 None
C23G10.1b ENSEMBL cdna:known chromosome:CEL140:III:6209223:6212766:1 gene:C23G10.1 11/11 A 
C23G10.1a ENSEMBL cdna:known chromosome:CEL140:III:6210596:6212766:1 gene:C23G10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6209293-6212765(+) 100.0 100.0
Public Domain and Genome References
Ensembl C23G10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13325 Hypothetical protein C23G10.1b [Caenorhabditis elegans] ref|NP_498351.1| C23G10.1b [Caenorhabditis elegans] 0.0
blast T15581 phosphoprotein phosphatase (EC 3.1.3.16) C23G10.1 [similarity] - Caenorhabditis elegans 0.0
blast AAF99871 Hypothetical protein C23G10.1a [Caenorhabditis elegans] ref|NP_498352.1| C23G10.1a [Caenorhabditis elegans] sp|P48459|YSD1_CAEEL Putative serine/threonine protein phosphatase C23G10.1 in chromosome II 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-38
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-38
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.6E-40
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.6E-40
Sequence
Target Sequence 
>C. ELEGANS:188563_S_AT
ccacgtggcgcaagtgttcagtttggtgagaacgaggtgaaggagatgtgcaagcttctg
gacattgatttgattgttcgtggacatcaagttgtacaggacggatatgagttttttgca
ggaaagaaacttgtgaccgtcttctccgctcctcattacatgcaatcgttcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTGGCGCAAGTGTTCAGTTTG 114 275 1006 Antisense
GGCGCAAGTGTTCAGTTTGGTGAGA 702 541 1012 Antisense
ACGAGGTGAAGGAGATGTGCAAGCT 594 93 1037 Antisense
GTGCAAGCTTCTGGACATTGATTTG 558 479 1053 Antisense
GACATTGATTTGATTGTTCGTGGAC 411 371 1066 Antisense
TGATTGTTCGTGGACATCAAGTTGT 635 561 1076 Antisense
GGACATCAAGTTGTACAGGACGGAT 570 525 1087 Antisense
GGACGGATATGAGTTTTTTGCAGGA 259 525 1104 Antisense
GAAAGAAACTTGTGACCGTCTTCTC 629 223 1127 Antisense
CGCTCCTCATTACATGCAATCGTTC 550 253 1152 Antisense
TCCTCATTACATGCAATCGTTCACT 395 593 1155 Antisense
Sequence Source Affymetrix Proprietary Database