[Home] | [Total List]

[188559_at] protease

Description K02E7.10 /REP_DB=WormBase Gene ID /WP=CE11640 /TR=O17255 /GB=AAB71030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protease
Cluster 6grp_total > 60      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.4
(-1.2)
A 		8.7
(-1.4)
A 		3.9
(-3)
A 		22.4
(3)
A 		19
B 6.4
(-0.4)
A 		7.1
(0.1)
A 		3.1
(-3)
A 		10.8
(3)
A 		8
C 12.3
(3)
A 		7.9
(-0.4)
A 		4.6
(-3)
A 		12.3
(3)
A 		8
avr 9.4
(-0.1) 		7.9
(-0.9) 		3.9
(-3) 		15.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.4
(1.3)
A 		3.4
(-2.6)
A 		3.3
(-2.7)
A 		9.1
(3)
A 		7.5
(1.4)
A 		3
(-3)
A 		6
B 11.5
(3)
A 		5.6
(-2.7)
A 		5.3
(-3)
A 		7.5
(-0.9)
A 		9
(0.6)
A 		7.4
(-1)
A 		6
C 6.2
(-1.9)
A 		17.7
(3)
A 		17.2
(2.8)
A 		16.4
(2.5)
A 		3.5
(-3)
A 		8.2
(-1)
A 		14
avr 8.4
(-0.3) 		8.9
(0.4) 		8.6
(-0) 		11
(3) 		6.7
(-2.4) 		6.2
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.4
(3)
A 		1.9
(-0.8)
A 		1
(-3)
A 		3.3
(2.8)
A 		2
B 2
(1.9)
A 		1.8
(1.1)
A 		0.7
(-3)
A 		2.3
(3)
A 		2
C 4.1
(3)
A 		2.3
(-1.3)
A 		1.6
(-3)
A 		2.1
(-1.8)
A 		3
avr 3.2
(3) 		2
(-0.4) 		1.1
(-3) 		2.6
(1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.4
(-0.4)
A 		1.2
(-1.1)
A 		0.7
(-3)
A 		2.3
(3)
A 		2.3
(3)
A 		0.7
(-3)
A 		2
B 4
(3)
A 		1.9
(-1.7)
A 		1.3
(-3)
A 		2
(-1.4)
A 		3.7
(2.3)
A 		2.8
(0.3)
A 		3
C 2.3
(-1.3)
A 		5.4
(3)
A 		4.4
(1.6)
A 		3.3
(0.1)
A 		1.1
(-3)
A 		2.8
(-0.6)
A 		4
avr 2.6
(1.3) 		2.8
(3) 		2.1
(-3) 		2.5
(0.4) 		2.4
(-0.4) 		2.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4218
Sequence Type Exemplar sequence
Representative Public ID K02E7.10 NCBI
Target Description K02E7.10 /REP_DB=WormBase Gene ID /WP=CE11640 /TR=O17255 /GB=AAB71030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061503 NCBI Caenorhabditis elegans K02E7.10 (protease) mRNA, complete cds. 11/11 None
SNAP00000023026 ENSEMBL cdna:SNAP chromosome:CEL140:II:1065572:1066778:-1 11/11 None
GENEFINDER00000023035 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1065572:1067004:-1 11/11 None
K02E7.10 ENSEMBL cdna:known chromosome:CEL140:II:1065572:1067004:-1 gene:K02E7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1065570-1067003(-) 100.0 100.0
Public Domain and Genome References
Gene Title protease
Ensembl K02E7.10
Entrez Gene 186889 Entrez gene
SwissProt O17255 EMBL-EBI
WormBase CE11640 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71030 Hypothetical protein K02E7.10 [Caenorhabditis elegans] ref|NP_493904.1| K02E7.10 [Caenorhabditis elegans] 1.0E-168
blast AAB71030 Hypothetical protein K02E7.10 [Caenorhabditis elegans] ref|NP_493904.1| K02E7.10 [Caenorhabditis elegans] 1.0E-134
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 3.0E-63
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 3.0E-59
blast NP_493866 C32B5.13 [Caenorhabditis elegans] gb|AAB37968.1| Hypothetical protein C32B5.13 [Caenorhabditis elegans] 4.0E-48
blast NP_493866 C32B5.13 [Caenorhabditis elegans] gb|AAB37968.1| Hypothetical protein C32B5.13 [Caenorhabditis elegans] 5.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493904.1 1 37-56
K02E7.10 1 37-56
GENEFINDER00000023035 1 37-56
Sequence
Target Sequence 
>C. ELEGANS:188559_AT
gggaagtgcaatgcgtcctatgcttttgccgcaattgccgcaattgagtccatgtacgcc
aaggctaataatggaaaacttttgtcgttttcggagcagcagattattgattgtgccaac
ttcacaaacccatgccaggagaatctagaaaatgttttaagtaatagattccttaaggaa
aacggagttggaaccgaagctgactacccatatgttggaaaggaaaatgtaggaaaatgt
gaatatgactcaagcaaaatgaaacttcgaccaacttacatagatgtgtatcctaatgaa
gagtgggcaagagctcacatcaccacgttcggaactgggtatttcagaatgaggagccct
ccatccttcttccactacaaaactggaatctataaccccaccaaggaagaatgcgggaat
gccaatgaagctcgatcgttggcaattgttggttacggcaaagacggagcagaaaagtat
tggattgtgaagggctcatttggtacttcatgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGTGCAATGCGTCCTATGCTT 100 495 307 Antisense
TCCTATGCTTTTGCCGCAATTGCCG 531 591 322 Antisense
AATTGCCGCAATTGAGTCCATGTAC 73 179 339 Antisense
ACTTCACAAACCCATGCCAGGAGAA 309 103 425 Antisense
GAAACTTCGACCAACTTACATAGAT 494 355 567 Antisense
GAGTGGGCAAGAGCTCACATCACCA 690 401 607 Antisense
TCACATCACCACGTTCGGAACTGGG 565 625 621 Antisense
TCAGAATGAGGAGCCCTCCATCCTT 654 623 650 Antisense
GGAATCTATAACCCCACCAAGGAAG 112 533 691 Antisense
GGAATGCCAATGAAGCTCGATCGTT 483 531 722 Antisense
AGGGCTCATTTGGTACTTCATGGGG 431 57 797 Antisense
Sequence Source Affymetrix Proprietary Database