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[188558_s_at]

Description C18A11.7 /REP_DB=WormBase Gene ID /WP=CE27706 /GEN=dim-1 /TR=SW:Q18066 /GB=AAC69011.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 06      6grp_total > 31      4grp_total > 58      6grp_cgc > 73      6grp_high1_sub > 02_03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16816
1 2 3 4 range
A 6460.1
(-0.8)
P 		17229.8
(3)
P 		14236.9
(1.9)
P 		430.1
(-3)
P 		16800
B 6433.6
(-0.5)
P 		14889.7
(3)
P 		14409.8
(2.8)
P 		413.9
(-3)
P 		14476
C 6947.2
(0)
P 		13313.9
(3)
P 		13249.8
(3)
P 		464.2
(-3)
P 		12850
avr 6613.6
(-0.5) 		15144.5
(3) 		13965.5
(2.5) 		436.1
(-3) 		14708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11538
1 2 3 4 5 6 range
A 7807.8
(-0.4)
P 		12529.4
(3)
P 		10408.2
(1.5)
P 		11025.9
(1.9)
P 		7660.6
(-0.5)
P 		4101.1
(-3)
P 		8428
B 7379.8
(0.6)
P 		10431.8
(3)
P 		9121.8
(2)
P 		9340.3
(2.1)
P 		7447
(0.6)
P 		2881.4
(-3)
P 		7550
C 8390.7
(-0.2)
P 		10306
(0.8)
P 		14418.9
(3)
P 		7950.6
(-0.4)
P 		9005.2
(0.2)
P 		3000.4
(-3)
P 		11419
avr 7859.4
(0.4) 		11089.1
(2.8) 		11316.3
(3) 		9438.9
(1.6) 		8037.6
(0.5) 		3327.6
(-3) 		7989
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4555
1 2 3 4 range
A 2352.1
(0.7)
P 		3740.1
(3)
P 		3721.8
(3)
P 		63
(-3)
P 		3677
B 2051.6
(0.3)
P 		3677.4
(3)
P 		3339.1
(2.4)
P 		88.2
(-3)
P 		3589
C 2299.7
(-0.1)
P 		3827.8
(2)
P 		4618
(3)
P 		78.3
(-3)
P 		4540
avr 2234.5
(0.4) 		3748.4
(2.8) 		3893
(3) 		76.5
(-3) 		3817

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3458
1 2 3 4 5 6 range
A 1439.3
(-2.2)
P 		4456.1
(3)
P 		2266.7
(-0.8)
P 		2796.4
(0.1)
P 		2311.6
(-0.7)
P 		998.5
(-3)
P 		3458
B 2567.8
(0.7)
P 		3472.3
(3)
P 		2215.1
(-0.1)
P 		2473.9
(0.5)
P 		3025.6
(1.9)
P 		1074.5
(-3)
P 		2398
C 3110.1
(1.7)
P 		3144.7
(1.8)
P 		3669.8
(3)
P 		1598.9
(-1.7)
P 		2914
(1.3)
P 		1004.4
(-3)
P 		2665
avr 2372.4
(0) 		3691
(3) 		2717.2
(0.8) 		2289.7
(-0.2) 		2750.4
(0.9) 		1025.8
(-3) 		2665
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188558_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16742
Sequence Type Exemplar sequence
Representative Public ID C18A11.7 NCBI
Target Description C18A11.7 /REP_DB=WormBase Gene ID /WP=CE27706 /GEN=dim-1 /TR=SW:Q18066 /GB=AAC69011.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029250(11), NM_001029249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029250 NCBI Caenorhabditis elegans DIsorganized Muscle family member (dim-1) (dim-1) mRNA, complete cds. 11/11 None
NM_001029249 NCBI Caenorhabditis elegans DIsorganized Muscle family member (dim-1) (dim-1) mRNA, complete cds. 11/11 None
SNAP00000023789 ENSEMBL cdna:SNAP chromosome:CEL140:X:8050958:8052618:-1 11/11 None
GENEFINDER00000023800 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8050958:8052618:-1 11/11 None
C18A11.7b.4 ENSEMBL cdna:known chromosome:CEL140:X:8050279:8052620:-1 gene:C18A11.7 11/11 None
C18A11.7b.2 ENSEMBL cdna:known chromosome:CEL140:X:8050417:8058172:-1 gene:C18A11.7 11/11 A 
C18A11.7b.1 ENSEMBL cdna:known chromosome:CEL140:X:8050417:8052620:-1 gene:C18A11.7 11/11 A 
C18A11.7b.3 ENSEMBL cdna:known chromosome:CEL140:X:8050682:8053034:-1 gene:C18A11.7 11/11 None
C18A11.7a ENSEMBL cdna:known chromosome:CEL140:X:8050958:8058159:-1 gene:C18A11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8050956-8058150(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18A11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP31442 Disorganized muscle protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024421.1| DIsorganized Muscle family member (dim-1) [Caenorhabditis elegans] gb|AAM21705.1| DIM-1 short protein isoform [Caenorhabditis elegans] 0.0
blast AAC69011 Disorganized muscle protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024420.1| DIsorganized Muscle family member (dim-1) [Caenorhabditis elegans] gb|AAM23316.1| DIM-1(L) [Caenorhabditis elegans] sp|Q18066|DIM1_CAEEL Disorganized muscle protein 1 (2D-page protein spot 8) 0.0
blast CAE70343 Hypothetical protein CBG16888 [Caenorhabditis briggsae] 0.0
blast H89581 protein dim-1 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Sequence
Target Sequence 
>C. ELEGANS:188558_S_AT
gatcattgccaactctgacagaatcaaggctgtgaagaagctcgaggccggaaacgtcta
ctattccgctctcgaaatcaaggagccaaccaaggacaaggacgccggacagttcatctg
caccgtcaagaacgagtctggaaagctcaccgccacgttcaccgtcaagttcgaggtgcc
agagggagccccatctttcaccagaaaaccacaaatcctccaacaaacatcggccggagg
agagccagcaatttgctttgacattggatactcagccagaatgaacccacaagtcacctg
gatttcaccaaagtccaagaagatgaaggagtcctctcgtatcaagttcaagaccaacga
cgaaggaaatggcaacttcactgctcaattggagcttacagtgagtttttttttaagttc
taaccaattcggttatacagaagttcttaggacaattttttacaataaaaattttcagaa
ctacaaggcaaaggattcgggtacctacacttgcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATTGCCAACTCTGACAGAATC 7 421 1407 Antisense
GAAGCTCGAGGCCGGAAACGTCTAC 640 339 1443 Antisense
TCTACTATTCCGCTCTCGAAATCAA 120 615 1463 Antisense
ACAAGGACGCCGGACAGTTCATCTG 521 113 1502 Antisense
GAACGAGTCTGGAAAGCTCACCGCC 76 347 1536 Antisense
CCACGTTCACCGTCAAGTTCGAGGT 327 271 1559 Antisense
ACAAATCCTCCAACAAACATCGGCC 530 111 1617 Antisense
GAACCCACAAGTCACCTGGATTTCA 566 345 1689 Antisense
GAGTCCTCTCGTATCAAGTTCAAGA 23 401 1735 Antisense
ATGGCAACTTCACTGCTCAATTGGA 687 51 1775 Antisense
ATTCGGGTACCTACACTTGCAACAT 704 7 1901 Antisense
Sequence Source Affymetrix Proprietary Database