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[188556_s_at] SET domain

Description C49F5.2 /REP_DB=WormBase Gene ID /WP=CE08853 /TR=O17679 /GB=CAB03974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=SET domain
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 326.3
(3)
P 		67.6
(-3)
A 		116.8
(-1.9)
A 		188
(-0.2)
P 		259
B 253.6
(3)
P 		107.9
(-1.6)
P 		64.6
(-3)
P 		222.5
(2)
P 		189
C 271.6
(3)
P 		148.9
(-1.4)
M 		104.7
(-3)
P 		142.5
(-1.6)
P 		167
avr 283.8
(3) 		108.1
(-2.6) 		95.4
(-3) 		184.3
(-0.2) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 194.8
(3)
P 		181.1
(1.9)
P 		169
(1)
P 		163.6
(0.6)
P 		136.8
(-1.5)
P 		118
(-3)
P 		77
B 222.8
(0.8)
P 		254.3
(2.4)
P 		266.2
(3)
P 		195.8
(-0.5)
P 		146.2
(-3)
P 		178.5
(-1.4)
P 		120
C 240.2
(1.7)
P 		279.9
(3)
P 		158
(-0.9)
P 		181
(-0.2)
P 		93.8
(-3)
P 		144
(-1.4)
P 		186
avr 219.3
(2) 		238.4
(3) 		197.7
(0.8) 		180.1
(-0.1) 		125.6
(-3) 		146.8
(-1.9) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 118.8
(3)
P 		14.7
(-3)
A 		30.5
(-2.1)
A 		27.5
(-2.3)
P 		104
B 80.9
(3)
P 		26.6
(-1.9)
P 		15
(-3)
P 		47.4
(-0.1)
P 		66
C 89.9
(3)
P 		42.8
(-1.3)
M 		36.5
(-1.9)
P 		24
(-3)
P 		66
avr 96.5
(3) 		28
(-2.9) 		27.3
(-3) 		33
(-2.5) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 35.9
(-1.8)
P 		64.4
(3)
P 		36.8
(-1.6)
P 		41.5
(-0.8)
P 		41.3
(-0.9)
P 		28.7
(-3)
P 		36
B 77.5
(1.7)
P 		84.6
(3)
P 		64.7
(-0.7)
P 		51.9
(-3)
P 		59.4
(-1.6)
P 		66.6
(-0.3)
P 		33
C 89
(3)
P 		85.4
(2.6)
P 		40.2
(-2)
P 		36.4
(-2.4)
P 		30.3
(-3)
P 		48.2
(-1.2)
P 		59
avr 67.5
(1.2) 		78.1
(3) 		47.2
(-2.3) 		43.3
(-3) 		43.7
(-2.9) 		47.8
(-2.2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188556_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16092
Sequence Type Exemplar sequence
Representative Public ID C49F5.2 NCBI
Target Description C49F5.2 /REP_DB=WormBase Gene ID /WP=CE08853 /TR=O17679 /GB=CAB03974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=SET domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077602 NCBI Caenorhabditis elegans C49F5.2 (C49F5.2) mRNA, complete cds. 11/11 None
SNAP00000033506 ENSEMBL cdna:SNAP chromosome:CEL140:X:11970228:11973007:-1 10/11 None
GENEFINDER00000033513 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11970228:11974597:-1 11/11 None
C49F5.2 ENSEMBL cdna:known chromosome:CEL140:X:11969951:11974597:-1 gene:C49F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11970227-11974597(-) 100.0 100.0
Public Domain and Genome References
Gene Title SET domain
Ensembl C49F5.2
Entrez Gene 181371 Entrez gene
SwissProt O17679 EMBL-EBI
WormBase CE31454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03974 Hypothetical protein C49F5.2 [Caenorhabditis elegans] ref|NP_510003.2| C49F5.2 [Caenorhabditis elegans] 0.0
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 5.0E-86
blast CAE69395 Hypothetical protein CBG15522 [Caenorhabditis briggsae] 1.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.4E-41
Pfam IPR001214 EMBL-EBI Nuclear protein SET 4.5E-35
Sequence
Target Sequence 
>C. ELEGANS:188556_S_AT
acacctttacaacctgcttcgtgaaaagtacaaaaacaatccagaatactatgatgtact
ggacgaattgagcaagcatcattttcacttggacgccaaaatgcaaggaagtgttggcag
atttgcaaatcattcatgtactccgaatatggaacctcttcgacttttcaaagaaggatt
tacacccgccaatatgcgaatgatttttttcactctgaaggacatttttccaggagaacc
tcttactctggattatggctcagaatacaaggtgtttcgaaggcaaagatgtctttgtag
aacatttgcctgtagaagtgggccgcattatgagaagttttcaaatttggatgggaaatt
gattgcatcatgttttgttagacttcatcacgcatcccgcattcgatattcggtggactt
acagctaatagaaagattttattctgttggaaaagttgaggaggttcgggttgatccatg
tgtatctttttcaaaatataacctgaaatggaggcgacaattgtctacagcgacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCTTTACAACCTGCTTCGTGAA 305 99 1638 Antisense
AAGCATCATTTTCACTTGGACGCCA 631 149 1711 Antisense
TTTGCAAATCATTCATGTACTCCGA 163 669 1759 Antisense
ATATGGAACCTCTTCGACTTTTCAA 299 19 1784 Antisense
GGATTTACACCCGCCAATATGCGAA 461 507 1813 Antisense
ATTTGCCTGTAGAAGTGGGCCGCAT 507 15 1941 Antisense
GTTTTGTTAGACTTCATCACGCATC 615 447 2009 Antisense
CACGCATCCCGCATTCGATATTCGG 111 201 2026 Antisense
GATATTCGGTGGACTTACAGCTAAT 188 427 2042 Antisense
GAGGTTCGGGTTGATCCATGTGTAT 95 403 2098 Antisense
GGCGACAATTGTCTACAGCGACTTG 291 541 2150 Antisense
Sequence Source Affymetrix Proprietary Database