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[188554_at]

Description F59A6.2 /REP_DB=WormBase Gene ID /WP=CE01980 /GEN=msp-71ps /TR=Q21028 /GB=AAK31522.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3.9
(-3)
A 		27.7
(1.6)
A 		12.6
(-1.3)
A 		35.2
(3)
A 		31
B 8.2
(-1.7)
A 		27.2
(3)
A 		3
(-3)
A 		4.6
(-2.6)
A 		24
C 2.4
(-2.5)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		13
(3)
A 		12
avr 4.8
(-3) 		18.9
(3) 		5.7
(-2.6) 		17.6
(2.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 1.5
(-3)
A 		19.2
(-0.8)
A 		50.3
(3)
A 		1.8
(-3)
A 		8.8
(-2.1)
A 		42.5
(2)
A 		49
B 0.8
(-3)
A 		8
(-1.4)
A 		11.1
(-0.7)
A 		5.1
(-2)
A 		27.5
(3)
A 		8.4
(-1.3)
A 		27
C 18.2
(-1.2)
A 		19.3
(-1)
A 		4.6
(-3)
A 		5.8
(-2.8)
A 		12.4
(-2)
A 		49.6
(3)
A 		45
avr 6.8
(-2.5) 		15.5
(-0.7) 		22
(0.6) 		4.2
(-3) 		16.2
(-0.5) 		33.5
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.4
(-3)
A 		6
(3)
A 		3.3
(-0.5)
A 		5.2
(2)
A 		5
B 2.6
(-1.1)
A 		6.7
(3)
A 		0.7
(-3)
A 		1
(-2.7)
A 		6
C 0.8
(-1.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2.2
(3)
A 		2
avr 1.6
(-2.8) 		4.4
(3) 		1.5
(-3) 		2.8
(-0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.3
(-3)
A 		6.8
(0.6)
A 		11
(3)
A 		0.5
(-2.9)
A 		2.6
(-1.7)
A 		10.3
(2.6)
A 		11
B 0.3
(-3)
A 		2.7
(-1.7)
A 		2.7
(-1.7)
A 		1.4
(-2.4)
A 		11.2
(3)
A 		3.1
(-1.5)
A 		11
C 6.7
(-0.9)
A 		5.9
(-1.2)
A 		1.2
(-3)
A 		1.2
(-3)
A 		4
(-1.9)
A 		16.6
(3)
A 		15
avr 2.4
(-2.1) 		5.1
(-0.3) 		5
(-0.3) 		1
(-3) 		5.9
(0.3) 		10
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4696
Sequence Type Exemplar sequence
Representative Public ID F59A6.2 NCBI
Target Description F59A6.2 /REP_DB=WormBase Gene ID /WP=CE01980 /GEN=msp-71ps /TR=Q21028 /GB=AAK31522.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062523 NCBI Caenorhabditis elegans F59A6.2 (F59A6.2) mRNA, complete cds. 11/11 None
SNAP00000007650 ENSEMBL cdna:SNAP chromosome:CEL140:II:5014744:5015267:1 11/11 None
GENEFINDER00000007655 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5014744:5015267:1 11/11 None
F59A6.2 ENSEMBL cdna:known chromosome:CEL140:II:5014744:5015267:1 gene:F59A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5014741-5015265(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A6.2
Entrez Gene 191710 Entrez gene
SwissProt Q21028 EMBL-EBI
WormBase CE01980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31522 Hypothetical protein F59A6.2 [Caenorhabditis elegans] ref|NP_494924.1| F59A6.2 [Caenorhabditis elegans] 1.0E-40
blast CAE60201 Hypothetical protein CBG03762 [Caenorhabditis briggsae] emb|CAE60149.1| Hypothetical protein CBG03699 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:188554_AT
ggaggaactccagtggtggcaacaaaaccaccagtcgataatgcaaagatgttgggcgag
ctgaagctgagactgatgcacacgaagaagggactcctcgctattcgaggagagctacag
agaagagctgaaatatggggagctgctcaagaggagatcactgcactggagaaaatggcg
agcgatgcaaaggagaggatccagaagcagtcggaccaaaagagagaggagagaaagttg
gcggctcaaaaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAACTCCAGTGGTGGCAACAA 444 513 22 Antisense
GGCAACAAAACCACCAGTCGATAAT 427 533 39 Antisense
AAGATGTTGGGCGAGCTGAAGCTGA 165 155 67 Antisense
AAGCTGAGACTGATGCACACGAAGA 217 151 85 Antisense
ACGAAGAAGGGACTCCTCGCTATTC 290 91 103 Antisense
CTCGCTATTCGAGGAGAGCTACAGA 601 233 118 Antisense
GCTGAAATATGGGGAGCTGCTCAAG 68 297 148 Antisense
GCTCAAGAGGAGATCACTGCACTGG 125 303 166 Antisense
GCACTGGAGAAAATGGCGAGCGATG 270 311 184 Antisense
GAGGATCCAGAAGCAGTCGGACCAA 536 403 216 Antisense
GAGAAAGTTGGCGGCTCAAAAACGA 129 391 252 Antisense
Sequence Source Affymetrix Proprietary Database