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[188553_at] SLP-1

Description B0303.9 /REP_DB=WormBase Gene ID /WP=CE00012 /TR=SW:P34260 /GB=AAA27901.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=SLP-1
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 73      4grp_total > 06      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 420.9
(3)
P 		243.9
(-3)
P 		321
(-0.4)
P 		413.4
(2.7)
P 		177
B 407.4
(-0.6)
P 		359.1
(-3)
P 		362.4
(-2.8)
P 		479.5
(3)
P 		120
C 400.1
(1.2)
P 		285
(-3)
P 		350.1
(-0.6)
P 		449.5
(3)
P 		165
avr 409.5
(1.5) 		296
(-3) 		344.5
(-1.1) 		447.5
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 256.7
(-3)
P 		395.6
(0.8)
P 		313.3
(-1.4)
P 		474.9
(3)
P 		400.1
(0.9)
P 		415.4
(1.4)
P 		218
B 313.5
(-3)
P 		361.5
(0.7)
P 		331.9
(-1.6)
P 		391.9
(3)
P 		373.2
(1.6)
P 		381.8
(2.2)
P 		78
C 388.9
(0.2)
P 		373.3
(-0.5)
P 		448.9
(3)
P 		318.9
(-3)
P 		365.1
(-0.9)
P 		326.3
(-2.7)
P 		130
avr 319.7
(-3) 		376.8
(1.5) 		364.7
(0.6) 		395.2
(3) 		379.5
(1.8) 		374.5
(1.4) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 153.3
(3)
P 		52.9
(-3)
P 		83.9
(-1.1)
P 		60.5
(-2.5)
P 		100
B 129.9
(3)
P 		88.7
(-2.4)
P 		84
(-3)
P 		102.2
(-0.6)
P 		46
C 132.5
(3)
P 		81.9
(-2.4)
P 		122
(1.9)
P 		75.8
(-3)
P 		57
avr 138.6
(3) 		74.5
(-3) 		96.6
(-0.9) 		79.5
(-2.5) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 47.3
(-3)
P 		140.7
(3)
P 		68.2
(-1.7)
P 		120.4
(1.7)
P 		120.7
(1.7)
P 		101.1
(0.5)
P 		93
B 109.1
(-0.6)
P 		120.3
(0.4)
P 		80.6
(-3)
P 		103.8
(-1)
P 		151.6
(3)
P 		142.4
(2.2)
P 		71
C 144.2
(3)
P 		113.9
(0.7)
P 		114.3
(0.8)
P 		64.1
(-3)
P 		118.2
(1.1)
P 		109.2
(0.4)
P 		80
avr 100.2
(-1.2) 		125
(2.3) 		87.7
(-3) 		96.1
(-1.8) 		130.2
(3) 		117.6
(1.2) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6253
Sequence Type Exemplar sequence
Representative Public ID B0303.9 NCBI
Target Description B0303.9 /REP_DB=WormBase Gene ID /WP=CE00012 /TR=SW:P34260 /GB=AAA27901.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=SLP-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066519 NCBI Caenorhabditis elegans B0303.9 (SLP-1) mRNA, complete cds. 11/11 None
SNAP00000042409 ENSEMBL cdna:SNAP chromosome:CEL140:III:8700831:8703031:1 11/11 None
GENEFINDER00000042419 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8700831:8703031:1 11/11 None
B0303.9 ENSEMBL cdna:known chromosome:CEL140:III:8700831:8703208:1 gene:B0303.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8700825-8703026(+) 100.0 100.0
Public Domain and Genome References
Gene Title SLP-1
Ensembl B0303.9
Entrez Gene 176221 Entrez gene
SwissProt P34260 EMBL-EBI
WormBase CE00539 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9306 protein secretion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27901 Hypothetical protein B0303.9 [Caenorhabditis elegans] ref|NP_498920.2| B0303.9 [Caenorhabditis elegans] sp|P34260|SLP1_CAEEL Protein slp-1 0.0
blast CAE69285 Hypothetical protein CBG15340 [Caenorhabditis briggsae] 0.0
blast XP_534660 PREDICTED: similar to vacuolar protein sorting 33A [Canis familiaris] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188553_AT
ctcatctttgatgcttctccattgaatgctgttcttcgcctcatttcagttcattctctg
acatgtggtggcctgaaaccatcagttctccaacactatcgtcgaattgtcaatcaaagt
tatggatcttcagctttgaataaagttctgaaaatgcagaaaatgggattgattcgtgaa
aaaggaggtggcggaaagatgcaatgtgaatatgctcaaatgatgttccaacaaatgaag
aaaaatcacgatatgttgccagaagagttcagtgaagcaaaacttgatgatatggcctac
gcctacagtggattctcaccacttttatgtaaaatgcttgaagaaggagatcgagtgaaa
tgggtcggctggccaaaaactgtaattggagataaatcagatttgattgctgaaagagat
ggcagagggacctgtgtgttcgttattggaggactaacacgatcggaattggcaattatt
cgagaaaatcttccgaatgttgcacttatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCTTTGATGCTTCTCCATTGA 550 229 1177 Antisense
TCTCCATTGAATGCTGTTCTTCGCC 333 609 1192 Antisense
GCCTCATTTCAGTTCATTCTCTGAC 12 283 1214 Antisense
CATTCTCTGACATGTGGTGGCCTGA 121 217 1228 Antisense
GTGGCCTGAAACCATCAGTTCTCCA 162 493 1244 Antisense
AGTTCTCCAACACTATCGTCGAATT 91 65 1260 Antisense
GATGATATGGCCTACGCCTACAGTG 635 409 1462 Antisense
GGATTCTCACCACTTTTATGTAAAA 247 509 1486 Antisense
GAGTGAAATGGGTCGGCTGGCCAAA 71 399 1529 Antisense
AGAGGGACCTGTGTGTTCGTTATTG 435 49 1600 Antisense
ATCTTCCGAATGTTGCACTTATCAC 432 31 1664 Antisense
Sequence Source Affymetrix Proprietary Database