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[188551_s_at]

Description D2024.6 /REP_DB=WormBase Gene ID /WP=CE04295 /GEN=cap-1 /TR=SW:P34685 /GB=AAA82286.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 11      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 67      6grp_total > 13      4grp_total > 60      6grp_cgc > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 913
1 2 3 4 range
A 1881.7
(3)
P 		1674.6
(1.5)
P 		1796.2
(2.4)
P 		1071.2
(-3)
P 		811
B 1605.1
(0.5)
P 		1949.3
(3)
P 		1459.6
(-0.6)
P 		1128.9
(-3)
P 		820
C 1984.4
(3)
P 		1846.4
(2.1)
P 		1915.4
(2.5)
P 		1083.2
(-3)
P 		901
avr 1823.7
(3) 		1823.4
(3) 		1723.7
(2.2) 		1094.4
(-3) 		729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 2105.6
(3)
P 		1976.2
(2.1)
P 		2101.5
(3)
P 		1908.7
(1.6)
P 		1633.5
(-0.3)
P 		1259.9
(-3)
P 		846
B 2034.8
(3)
P 		1894
(1.3)
P 		1636.7
(-1.9)
P 		1792
(0)
P 		1905.6
(1.4)
P 		1548.1
(-3)
P 		487
C 2116.7
(3)
P 		1904.8
(0.8)
P 		1723.9
(-1.1)
P 		1900
(0.7)
P 		1541.9
(-3)
P 		1575.7
(-2.6)
P 		575
avr 2085.7
(3) 		1925
(1.5) 		1820.7
(0.5) 		1866.9
(0.9) 		1693.7
(-0.8) 		1461.2
(-3) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 685.1
(3)
P 		363.5
(-0.7)
P 		469.6
(0.6)
P 		156.8
(-3)
P 		528
B 511.9
(3)
P 		481.4
(2.3)
P 		338.2
(-0.8)
P 		240.6
(-3)
P 		271
C 656.9
(2.9)
P 		530.9
(1.3)
P 		667.6
(3)
P 		182.7
(-3)
P 		485
avr 618
(3) 		458.6
(0.7) 		491.8
(1.2) 		193.4
(-3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 388.2
(-1.8)
P 		702.8
(3)
P 		457.7
(-0.7)
P 		484.1
(-0.3)
P 		492.9
(-0.2)
P 		306.7
(-3)
P 		396
B 708
(1.9)
P 		630.4
(0.7)
P 		397.4
(-3)
P 		474.6
(-1.8)
P 		774.2
(3)
P 		577.3
(-0.1)
P 		377
C 784.6
(3)
P 		581.2
(-0)
P 		438.8
(-2.2)
P 		382.1
(-3)
P 		498.9
(-1.3)
P 		527.5
(-0.8)
P 		403
avr 626.9
(2.7) 		638.1
(3) 		431.3
(-3) 		446.9
(-2.5) 		588.7
(1.6) 		470.5
(-1.9) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188551_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9109
Sequence Type Exemplar sequence
Representative Public ID D2024.6 NCBI
Target Description D2024.6 /REP_DB=WormBase Gene ID /WP=CE04295 /GEN=cap-1 /TR=SW:P34685 /GB=AAA82286.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068744 NCBI Caenorhabditis elegans CAP-z protein family member (cap-1) (cap-1) mRNA, complete cds. 11/11 A 
SNAP00000033323 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7229055:7230206:-1 11/11 None
GENEFINDER00000033339 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7228687:7230206:-1 11/11 None
D2024.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:7228401:7230207:-1 gene:D2024.6 11/11 None
D2024.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:7228451:7230209:-1 gene:D2024.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7228692-7230212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cap-1
Ensembl D2024.6
Entrez Gene 177497 Entrez gene
SwissProt P34685 EMBL-EBI
WormBase CE04295 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604149_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE:1587660_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFA.20167.1.S1_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFA.886.1.S1_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFAAFFX.20828.1.S1_S_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
DROSOPHILA_2:1625110_AT dm
DROSGENOME1:152284_AT dm
CHICKEN:GGA.2783.1.S1_AT capping protein (actin filament) muscle Z-line, alpha 1 gga
CHICKEN:GGAAFFX.11794.1.S1_S_AT capping protein (actin filament) muscle Z-line, alpha 1 gga
HG-U133_PLUS_2:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-FOCUS:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBC:RC_W92769_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HUGENEFL:U56637_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:G5453596_3P_A_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.247811.0.S1_3P_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.247811.0.S1_3P_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:217392_3P_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95AV2:40910_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95D:74743_F_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.303289.0.S1_3P_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.303289.0.S1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:216123_3P_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:238407_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:238407_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:238512_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:238512_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:241275_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:241275_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95B:47394_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95B:58100_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95E:77150_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBD:RC_AA410292_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBC:RC_AA343041_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.146200.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.146200.0.S1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.283489.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.61656.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
MOE430A:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430_2:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430A_2:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MU11KSUBA:U16740_S_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MG-U74AV2:93499_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOE430A:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430A_2:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430_2:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOE430B:1440380_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MOUSE430_2:1440380_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MG-U74CV2:134266_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MU11KSUBB:MSA.19664.0_S_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30036 actin cytoskeleton organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8290 F-actin capping protein complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79305 capping protein alpha subunit [Caenorhabditis elegans] emb|CAA79269.1| capping protein alpha subunit [Caenorhabditis elegans] ref|NP_501145.1| CAP-z protein family member (cap-1) [Caenorhabditis elegans] gb|AAA82286.1| Cap-z protein protein 1 [Caenorhabditis elegans] sp|P34685|CAPZA_CAEEL F-actin capping protein alpha subunit 1.0E-163
blast CAA79305 capping protein alpha subunit [Caenorhabditis elegans] emb|CAA79269.1| capping protein alpha subunit [Caenorhabditis elegans] ref|NP_501145.1| CAP-z protein family member (cap-1) [Caenorhabditis elegans] gb|AAA82286.1| Cap-z protein protein 1 [Caenorhabditis elegans] sp|P34685|CAPZA_CAEEL F-actin capping protein alpha subunit 1.0E-159
blast CAA79305 capping protein alpha subunit [Caenorhabditis elegans] emb|CAA79269.1| capping protein alpha subunit [Caenorhabditis elegans] ref|NP_501145.1| CAP-z protein family member (cap-1) [Caenorhabditis elegans] gb|AAA82286.1| Cap-z protein protein 1 [Caenorhabditis elegans] sp|P34685|CAPZA_CAEEL F-actin capping protein alpha subunit 1.0E-156
blast CAE61839 Hypothetical protein CBG05812 [Caenorhabditis briggsae] 1.0E-155
blast CAE61839 Hypothetical protein CBG05812 [Caenorhabditis briggsae] 1.0E-151
blast CAE61839 Hypothetical protein CBG05812 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR002189 EMBL-EBI F-actin capping protein, alpha subunit 1.0E-126
Pfam IPR002189 EMBL-EBI F-actin capping protein, alpha subunit 1.0E-126
Pfam IPR002189 EMBL-EBI F-actin capping protein, alpha subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188551_S_AT
atcacgtccgtaaagaggccgcagatcttcaaccacatccagccgagtctggaataaccg
aacaatggcgtcaagctcttcaaactcaactcgatatatatattgatgatcattacgcga
aaagtggaacgggagtggtttttgctcgaaacggagttttcacgatttgcatcgaatctc
atcaattccagccaaaaaatttctgtaacggaagatggcgttcggagtggaatgtgccgg
ttggcgatggtaaatcaggatctcaggagatgaaaggaaaaattttgtcgcaagttcatt
attacgaagacggaaacgtgcagttgttctctgagaaagagccggttcttaaagtcaatg
tttcggctgacttcgacaaaaccgccaaagaaataattcatgccatttccgaggaagaga
ctatatatcagaatgctgtacaagagaattacgctaatatgtctgataccacattcaaag
cacttcgtcgccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGTCCGTAAAGAGGCCGCAGA 64 29 296 Antisense
TCAACCACATCCAGCCGAGTCTGGA 523 631 324 Antisense
ATAACCGAACAATGGCGTCAAGCTC 701 23 349 Antisense
GTCAAGCTCTTCAAACTCAACTCGA 350 463 365 Antisense
TGGAACGGGAGTGGTTTTTGCTCGA 623 545 420 Antisense
GAATCTCATCAATTCCAGCCAAAAA 667 327 469 Antisense
GTGGAATGTGCCGGTTGGCGATGGT 657 487 522 Antisense
GGAAACGTGCAGTTGTTCTCTGAGA 666 527 607 Antisense
TCGGCTGACTTCGACAAAACCGCCA 581 605 658 Antisense
TAATTCATGCCATTTCCGAGGAAGA 66 635 689 Antisense
CATTCAAAGCACTTCGTCGCCAATT 458 215 767 Antisense
Sequence Source Affymetrix Proprietary Database