[Home] | [Total List]

[188547_at]

Description F53H1.1 /REP_DB=WormBase Gene ID /WP=CE17860 /CHR=4 /FEA=Sanger Annotation /DEF=helicase (ST.LOUIS) TR:O45076 protein_id:AAC02576.1
Cluster 6grp_total > 36      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 58.7
(0.5)
P 		33.4
(-2.4)
A 		28.3
(-3)
A 		80.4
(3)
P 		52
B 49.4
(-0.1)
A 		31.7
(-2.8)
A 		30.6
(-3)
A 		69.8
(3)
M 		39
C 64.5
(3)
P 		30.9
(-3)
A 		54.9
(1.3)
M 		53.2
(1)
A 		34
avr 57.5
(1.3) 		32
(-3) 		37.9
(-2) 		67.8
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 45.3
(-0)
A 		73.6
(3)
M 		28.9
(-1.8)
A 		43.2
(-0.2)
A 		17.4
(-3)
A 		31
(-1.5)
A 		56
B 28.2
(0.2)
A 		45.6
(2.6)
A 		24.4
(-0.3)
A 		4.3
(-3)
A 		22.2
(-0.6)
A 		48.8
(3)
A 		45
C 86.9
(3)
P 		56.9
(-0.1)
A 		54.9
(-0.3)
P 		28.5
(-3)
A 		58.4
(0.1)
A 		57.4
(-0)
A 		58
avr 53.5
(2.1) 		58.7
(3) 		36.1
(-1.1) 		25.3
(-3) 		32.7
(-1.7) 		45.7
(0.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 21.4
(3)
P 		7.3
(-3)
A 		7.4
(-3)
A 		11.8
(-1.1)
P 		14
B 15.7
(3)
A 		7.8
(-2.5)
A 		7.1
(-3)
A 		14.9
(2.4)
M 		9
C 21.4
(3)
P 		8.9
(-3)
A 		19.1
(1.9)
M 		9
(-3)
A 		13
avr 19.5
(3) 		8
(-3) 		11.2
(-1.3) 		11.9
(-1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.4
(-2.1)
A 		26.2
(3)
M 		6.3
(-2.7)
A 		11
(-1.4)
A 		5.3
(-3)
A 		7.6
(-2.3)
A 		21
B 9.8
(0.1)
A 		15.2
(1.9)
A 		5.9
(-1.3)
A 		1.1
(-3)
A 		9
(-0.2)
A 		18.2
(3)
A 		17
C 32.2
(3)
P 		17.4
(-0.4)
A 		14
(-1.1)
P 		5.7
(-3)
A 		18.9
(-0)
A 		19.2
(0.1)
A 		27
avr 16.8
(1.8) 		19.6
(3) 		8.7
(-1.8) 		5.9
(-3) 		11.1
(-0.7) 		15
(1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10721
Sequence Type Exemplar sequence
Representative Public ID F53H1.1 NCBI
Target Description F53H1.1 /REP_DB=WormBase Gene ID /WP=CE17860 /CHR=4 /FEA=Sanger Annotation /DEF=helicase (ST.LOUIS) TR:O45076 protein_id:AAC02576.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075652, NM_067661, NM_067662, NM_075651
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013782 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1297400:1309644:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067662 7/11 Cross Hyb Matching Probes A 
NM_067661 7/11 Cross Hyb Matching Probes A 
NM_075651 1/11 Cross Hyb Matching Probes A 
SNAP00000013765 7/11 Cross Hyb Matching Probes None
SNAP00000035180 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035182 2/11 Cross Hyb Matching Probes None
F53H1.1a 7/11 Cross Hyb Matching Probes A 
F53H1.1b 7/11 Cross Hyb Matching Probes A 
Y73B3B.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1303033-1309650(-) 92.89 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68386 Hypothetical protein F53H1.1 [Caenorhabditis elegans] ref|NP_500063.1| F53H1.1a [Caenorhabditis elegans] 0.0
blast CAE70203 Hypothetical protein CBG16678 [Caenorhabditis briggsae] 0.0
blast NP_500062 F53H1.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.9E-30
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.2E-41
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 4.2E-34
Sequence
Target Sequence 
>C. ELEGANS:188547_AT
ctttgagccgcaggtaggccagaaaattaggaaaagttcaatatttagatttttgcccaa
aacttgccaaatttatgtttttgaaggtggagtacggcctatcatgaaagtggtgaacaa
tatccgtcccgacaagcagactgtactcttctctgccacgtttccccgacacatggaggc
tctggcacgaaaagttctggataaacctgttgagattttggtcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGAGCCGCAGGTAGGCCAGAAA 155 223 1422 Antisense
GTTCAATATTTAGATTTTTGCCCAA 392 445 1457 Antisense
GATTTTTGCCCAAAACTTGCCAAAT 373 427 1469 Antisense
GGTGGAGTACGGCCTATCATGAAAG 253 499 1507 Antisense
AAGTGGTGAACAATATCCGTCCCGA 622 159 1529 Antisense
TATCCGTCCCGACAAGCAGACTGTA 327 647 1542 Antisense
CAAGCAGACTGTACTCTTCTCTGCC 2 187 1554 Antisense
CGACACATGGAGGCTCTGGCACGAA 14 253 1588 Antisense
GAGGCTCTGGCACGAAAAGTTCTGG 665 405 1597 Antisense
AAAGTTCTGGATAAACCTGTTGAGA 243 123 1612 Antisense
AAACCTGTTGAGATTTTGGTCGGTG 282 125 1624 Antisense
Sequence Source Affymetrix Proprietary Database