[Home] | [Total List]

[188542_s_at] permease /// permease

Description T07G12.2 /REP_DB=WormBase Gene ID /WP=CE13389 /TR=O18061 /GB=CAB05274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=permease
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 22      4grp_high_8_8 > 20      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 04      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 101
(1.9)
P 		57
(-3)
P 		58.6
(-2.8)
P 		111.3
(3)
P 		54
B 69.9
(0.4)
P 		31.5
(-3)
A 		39.8
(-2.3)
P 		99.7
(3)
P 		68
C 53.1
(-3)
P 		106.3
(1.7)
P 		80.9
(-0.6)
P 		121.3
(3)
P 		68
avr 74.7
(-1.2) 		64.9
(-2.4) 		59.8
(-3) 		110.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 103.6
(2.9)
P 		84.6
(1.2)
P 		104.6
(3)
P 		90.4
(1.7)
P 		42.4
(-2.6)
P 		38
(-3)
P 		67
B 121.7
(3)
P 		103.6
(0.9)
P 		114.8
(2.2)
P 		68.9
(-3)
P 		110.8
(1.8)
P 		82.9
(-1.4)
P 		53
C 87
(-1.4)
P 		151.4
(3)
P 		97.5
(-0.6)
P 		67.4
(-2.7)
P 		77.6
(-2)
P 		62.6
(-3)
P 		89
avr 104.1
(2) 		113.2
(3) 		105.6
(2.1) 		75.6
(-1.3) 		76.9
(-1.2) 		61.2
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 36.8
(3)
P 		12.4
(-3)
P 		15.3
(-2.3)
P 		16.3
(-2)
P 		24
B 22.3
(3)
P 		7.8
(-3)
A 		9.2
(-2.4)
P 		21.2
(2.5)
P 		15
C 17.6
(-3)
P 		30.6
(3)
P 		28.2
(1.9)
P 		20.4
(-1.7)
P 		13
avr 25.6
(3) 		16.9
(-3) 		17.6
(-2.5) 		19.3
(-1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.1
(-0.2)
P 		30.1
(3)
P 		22.8
(0.9)
P 		22.9
(0.9)
P 		12.8
(-2)
P 		9.3
(-3)
P 		21
B 42.3
(2.4)
P 		34.5
(0.6)
P 		27.9
(-0.8)
P 		18.3
(-3)
P 		45
(3)
P 		30.9
(-0.2)
P 		27
C 32.3
(0.4)
P 		46.2
(3)
P 		24.8
(-0.9)
P 		13.6
(-3)
P 		25.1
(-0.9)
P 		21
(-1.6)
P 		33
avr 31.2
(1.2) 		36.9
(3) 		25.2
(-0.8) 		18.3
(-3) 		27.6
(0) 		20.4
(-2.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188542_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8589
Sequence Type Exemplar sequence
Representative Public ID T07G12.2 NCBI
Target Description T07G12.2 /REP_DB=WormBase Gene ID /WP=CE13389 /TR=O18061 /GB=CAB05274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069543(11), NM_069545(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069543 NCBI Caenorhabditis elegans T07G12.2 (permease) mRNA, complete cds. 11/11 None
NM_069545 NCBI Caenorhabditis elegans T07G12.4 (permease) mRNA, complete cds. 11/11 None
SNAP00000026255 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10531182:10532860:1 11/11 None
SNAP00000026257 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10536454:10538563:-1 11/11 None
GENEFINDER00000026268 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10530724:10536402:1 11/11 None
GENEFINDER00000026269 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10536708:10544981:-1 11/11 None
T07G12.2 ENSEMBL cdna:known chromosome:CEL140:IV:10530706:10532887:1 gene:T07G12.2 11/11 None
T07G12.4 ENSEMBL cdna:known chromosome:CEL140:IV:10536708:10538656:-1 gene:T07G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10530729-10532866(+) 99.63 100.0
Public Domain and Genome References
Gene Title permease
permease
Ensembl T07G12.2
T07G12.4
Entrez Gene 188241 Entrez gene
188243 Entrez gene
SwissProt O18061 EMBL-EBI
O18063 EMBL-EBI
WormBase CE36195 Wormbase
CE13393 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248558_AT xanthine/uracil permease family protein at
CANINE_2:CFAAFFX.9490.1.S1_S_AT similar to Solute carrier family 23, member 1 (Sodium-dependent vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) cfa
CANINE_2:CFAAFFX.9496.1.S1_AT similar to Solute carrier family 23, member 1 (Sodium-dependent vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) cfa
HG-U133_PLUS_2:223732_AT solute carrier family 23 (nucleobase transporters), member 1 hs
HG-U133B:223732_AT solute carrier family 23 (nucleobase transporters), member 1 hs
U133_X3P:G6692600_3P_AT solute carrier family 23 (nucleobase transporters), member 1 hs
HG-U95E:89035_AT solute carrier family 23 (nucleobase transporters), member 1 hs
MOUSE430_2:1421912_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MOE430A:1421912_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MOUSE430A_2:1421912_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MG-U74AV2:104387_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MG-U74BV2:114181_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MG-U74BV2:114180_G_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MG-U74BV2:114179_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MOE430A:1450404_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MOUSE430A_2:1450404_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MOUSE430_2:1450404_AT solute carrier family 23 (nucleobase transporters), member 1 mm
MU19KSUBC:TC35009_AT Solute carrier family 23 (nucleobase transporters), member 1, mRNA (cDNA clone MGC:19208 IMAGE:4238222) mm
RG-U34B:RC_AA996842_AT solute carrier family 23 (nucleobase transporters), member 1 rn
RAE230A:1369169_AT solute carrier family 23 (nucleobase transporters), member 1 rn
RAT230_2:1369169_AT solute carrier family 23 (nucleobase transporters), member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05274 Hypothetical protein T07G12.2 [Caenorhabditis elegans] ref|NP_501944.2| T07G12.2 [Caenorhabditis elegans] 0.0
blast CAB05276 Hypothetical protein T07G12.4 [Caenorhabditis elegans] ref|NP_501946.1| T07G12.4 [Caenorhabditis elegans] 0.0
blast CAE63799 Hypothetical protein CBG08341 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.9E-8
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 2.2E-66
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 8.1E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501944.2 11 20-42,63-85,120-142,147-166,176-195,216-238,322-344,365-384,388-407,420-437,452-474
NP_501946.1 10 21-43,58-80,85-104,114-133,154-176,260-282,303-322,326-345,358-375,390-412
T07G12.2 11 20-42,63-85,120-142,147-166,176-195,216-238,322-344,365-384,388-407,420-437,452-474
T07G12.4 10 21-43,58-80,85-104,114-133,154-176,260-282,303-322,326-345,358-375,390-412
SNAP00000026255 10 7-29,44-63,70-92,102-121,142-164,248-270,291-310,314-333,346-363,378-400
SNAP00000026257 11 4-23,35-57,77-99,104-123,133-152,173-195,279-301,322-341,345-364,377-394,409-431
GENEFINDER00000026268 12 20-42,63-85,120-142,147-166,176-195,216-238,322-344,365-384,388-407,420-437,452-474,545-564
GENEFINDER00000026269 21 20-39,52-74,116-138,143-165,169-191,212-234,319-341,362-381,385-402,415-433,448-467,555-577,582-599,606-625,650-672,707-729,772-794,815-834,838-857,870-887,902-924
Sequence
Target Sequence 
>C. ELEGANS:188542_S_AT
gaactggtgttacaacttattcagagaatattgcaattatgcaagtcacaaaagtaacca
gtcgaataacaatgcaatgtgccggagtaattctaattttaatgggtattttctcgaaat
tcgctgcatttcttgcaatgatacctgaagctataattggaggagtattaactgctggaa
tgagtatgatttgtggagttgcattttcaaatttacaatcagttgatctacggctttcaa
gaaacttgacaataattggactttcaattattcttggatgcacaattccagctcactttg
agaaatcacctcttcatagtggaaataagacaattgatgacatttttggaacattattaa
aaatgagaatgcttgttggaggattaattgcattttgtttagatattattgctagtggag
caacaagaaagcaaagaggatttgaagataagttagagaagattgaaatatcagtggaaa
agaatggattcgcattgtcttcatttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGGTGTTACAACTTATTCAGA 386 343 1013 Antisense
GCAAGTCACAAAAGTAACCAGTCGA 283 321 1053 Antisense
AATGCAATGTGCCGGAGTAATTCTA 369 165 1083 Antisense
TGGGTATTTTCTCGAAATTCGCTGC 181 553 1115 Antisense
AATTCGCTGCATTTCTTGCAATGAT 705 177 1130 Antisense
TTCTTGCAATGATACCTGAAGCTAT 596 679 1142 Antisense
GTGGAGTTGCATTTTCAAATTTACA 675 489 1205 Antisense
ACAATCAGTTGATCTACGGCTTTCA 546 113 1227 Antisense
TGGATGCACAATTCCAGCTCACTTT 150 551 1287 Antisense
GAGAAATCACCTCTTCATAGTGGAA 388 393 1312 Antisense
GGATTCGCATTGTCTTCATTTGCAA 332 509 1498 Antisense
Sequence Source Affymetrix Proprietary Database