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[188539_s_at] esterase

Description F15A8.6 /REP_DB=WormBase Gene ID /WP=CE09404 /TR=O02147 /GB=AAB52848.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_high_8_8 > 04      6grp_highest_nonorm > 72      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 390.6
(-0.6)
P 		284.1
(-2.7)
M 		270.9
(-3)
A 		571.1
(3)
P 		300
B 379.7
(-0.5)
P 		303.1
(-1.9)
A 		243
(-3)
P 		572.8
(3)
P 		330
C 404.4
(-0.6)
P 		278.9
(-3)
P 		295.4
(-2.7)
P 		598
(3)
P 		319
avr 391.6
(-0.6) 		288.7
(-2.6) 		269.8
(-3) 		580.6
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 442.1
(3)
P 		392.4
(0.8)
P 		303.8
(-3)
P 		376.7
(0.2)
P 		442.4
(3)
P 		411.3
(1.7)
P 		139
B 570.1
(3)
P 		450.1
(-0.2)
P 		389.2
(-1.8)
P 		345.3
(-3)
P 		396.3
(-1.6)
P 		457.4
(-0)
P 		225
C 403.3
(-0.3)
P 		464.5
(2)
P 		333.2
(-3)
P 		440.6
(1.1)
P 		357.1
(-2.1)
P 		491.6
(3)
P 		158
avr 471.8
(3) 		435.7
(1.3) 		342.1
(-3) 		387.5
(-0.9) 		398.6
(-0.4) 		453.4
(2.1) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 142.2
(3)
P 		61.7
(-3)
M 		70.8
(-2.3)
A 		83.6
(-1.4)
P 		81
B 121.1
(2.9)
P 		74.9
(-1.3)
A 		56.3
(-3)
P 		122.1
(3)
P 		66
C 133.9
(3)
P 		80.2
(-3)
P 		102.9
(-0.5)
P 		100.8
(-0.7)
P 		54
avr 132.4
(3) 		72.3
(-3) 		76.7
(-2.6) 		102.2
(-0) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 81.5
(-1.7)
P 		139.6
(3)
P 		66.2
(-3)
P 		95.5
(-0.6)
P 		133.5
(2.5)
P 		100.1
(-0.2)
P 		73
B 198.4
(3)
P 		149.8
(0.3)
P 		94.5
(-2.8)
P 		91.5
(-3)
P 		161
(0.9)
P 		170.6
(1.4)
P 		107
C 149.5
(1.9)
P 		141.7
(1.3)
P 		84.8
(-3)
P 		88.6
(-2.7)
P 		115.5
(-0.7)
P 		164.6
(3)
P 		80
avr 143.1
(2.8) 		143.7
(2.9) 		81.8
(-3) 		91.9
(-2) 		136.7
(2.2) 		145.1
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188539_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16514
Sequence Type Exemplar sequence
Representative Public ID F15A8.6 NCBI
Target Description F15A8.6 /REP_DB=WormBase Gene ID /WP=CE09404 /TR=O02147 /GB=AAB52848.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076360 NCBI Caenorhabditis elegans F15A8.6 (esterase) mRNA, complete cds. 11/11 None
SNAP00000015907 ENSEMBL cdna:SNAP chromosome:CEL140:X:4431120:4434475:-1 11/11 None
GENEFINDER00000015912 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4431120:4434475:-1 11/11 None
F15A8.6 ENSEMBL cdna:known chromosome:CEL140:X:4430902:4434475:-1 gene:F15A8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4431120-4434476(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl F15A8.6
Entrez Gene 180715 Entrez gene
SwissProt O02147 EMBL-EBI
WormBase CE31907 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637833_AT Juvenile hormone esterase dm
Protein Similarities
Method ID Description E-Value
blast NP_508761 F15A8.6 [Caenorhabditis elegans] gb|AAB52848.3| Hypothetical protein F15A8.6 [Caenorhabditis elegans] 0.0
blast CAE68594 Hypothetical protein CBG14465 [Caenorhabditis briggsae] 0.0
blast AAB97558 Hypothetical protein F56C11.6a [Caenorhabditis elegans] ref|NP_490688.1| F56C11.6a [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188539_S_AT
cacgaggactttgaagcgctgcgagaagaagcaaagaagatgtatttgaaaaagttgtcg
gatgatgaagatgacaaggaagttgctgcaaggggttatattcagttgtacagcgacctg
tttgtcaataatggaacctataactatgcggaaaagatgacaaaacttggaaacaaagtg
ttcatgtactccttcgattactgtaaccctcgaagctttggtatcctctcactccgagct
ccattccgagctgctacacattgcaccgagctcgcatacatttttggtgtctccattgtg
ttcaactaccggtacaacgaatcggacagagcaatgctcgacttgatgacaaagatgtgg
acgaatttcgctaaatatggaaatccaaatgggcaatatgaagattcaacagtctttgat
ttcaaatgggaaccaacgagtaaagaagaacccacaaattttctagctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGAGGACTTTGAAGCGCTGCGAG 608 195 1204 Antisense
GTTGTACAGCGACCTGTTTGTCAAT 628 437 1308 Antisense
AAAGTGTTCATGTACTCCTTCGATT 69 123 1378 Antisense
CTCCTTCGATTACTGTAACCCTCGA 488 235 1392 Antisense
AACCCTCGAAGCTTTGGTATCCTCT 335 145 1408 Antisense
TCCATTCCGAGCTGCTACACATTGC 373 591 1443 Antisense
TGCACCGAGCTCGCATACATTTTTG 655 577 1465 Antisense
GTGTCTCCATTGTGTTCAACTACCG 531 485 1490 Antisense
GTTCAACTACCGGTACAACGAATCG 662 439 1503 Antisense
AGAGCAATGCTCGACTTGATGACAA 321 69 1531 Antisense
GAACCCACAAATTTTCTAGCTATCA 301 347 1651 Antisense
Sequence Source Affymetrix Proprietary Database