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[188534_s_at]

Description M01E11.7B /REP_DB=WormBase Gene ID /WP=CE12302 /TR=P92160 /GB=AAB37834.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=tensin
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 59      6grp_highest_sub > 02      6grp_cgc > 40      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 606
(2.3)
P 		650.3
(3)
P 		581.9
(1.9)
P 		289.4
(-3)
P 		361
B 470
(2.1)
P 		482.5
(2.5)
P 		495
(3)
P 		335
(-3)
P 		160
C 456.5
(0)
P 		622.2
(3)
P 		521.8
(1.2)
P 		286.1
(-3)
P 		336
avr 510.8
(1.4) 		585
(3) 		532.9
(1.9) 		303.5
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 586.8
(2.8)
P 		595.6
(3)
P 		429.4
(-1.4)
P 		484.8
(0.1)
P 		428.7
(-1.4)
P 		367.3
(-3)
P 		228
B 469.3
(0.9)
P 		525.8
(2.6)
P 		353.8
(-2.7)
P 		537.1
(3)
P 		401.9
(-1.2)
P 		344.5
(-3)
P 		193
C 481.9
(-0)
P 		639.3
(3)
P 		513.9
(0.6)
P 		519.6
(0.7)
P 		423.4
(-1.2)
P 		327.6
(-3)
P 		312
avr 512.7
(1.1) 		586.9
(3) 		432.4
(-0.9) 		513.8
(1.2) 		418
(-1.2) 		346.5
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 220.6
(3)
P 		141.2
(0.3)
P 		152.1
(0.7)
P 		42.4
(-3)
P 		178
B 149.9
(3)
P 		119.2
(0.7)
P 		114.7
(0.3)
P 		71.4
(-3)
P 		79
C 151.1
(1.6)
P 		178.9
(2.9)
P 		181.9
(3)
P 		48.2
(-3)
P 		134
avr 173.9
(3) 		146.4
(1.6) 		149.6
(1.8) 		54
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 108.2
(-2.1)
P 		211.8
(3)
P 		93.5
(-2.8)
P 		123
(-1.4)
P 		129.4
(-1)
P 		89.4
(-3)
P 		122
B 163.3
(2.2)
P 		175
(3)
P 		85.9
(-3)
P 		142.3
(0.8)
P 		163.3
(2.2)
P 		128.5
(-0.1)
P 		89
C 178.6
(1.9)
P 		195.1
(3)
P 		130.8
(-1.3)
P 		104.5
(-3)
P 		137
(-0.8)
P 		109.7
(-2.7)
P 		91
avr 150
(0.1) 		194
(3) 		103.4
(-3) 		123.3
(-1.7) 		143.2
(-0.4) 		109.2
(-2.6) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2037
Sequence Type Exemplar sequence
Representative Public ID M01E11.7B NCBI
Target Description M01E11.7B /REP_DB=WormBase Gene ID /WP=CE12302 /TR=P92160 /GB=AAB37834.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=tensin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059237(11), NM_059235(11), NM_059236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059237 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-163) (tag-163) mRNA, complete cds. 11/11 None
NM_059235 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-163) (tag-163) mRNA, complete cds. 11/11 None
NM_059236 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-163) (tag-163) mRNA, complete cds. 11/11 None
SNAP00000002377 ENSEMBL cdna:SNAP chromosome:CEL140:I:5583734:5586251:-1 11/11 None
GENEFINDER00000002382 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5583734:5588220:-1 11/11 None
M01E11.7b.1 ENSEMBL cdna:known chromosome:CEL140:I:5583415:5589578:-1 gene:M01E11.7 11/11 None
M01E11.7b.2 ENSEMBL cdna:known chromosome:CEL140:I:5583454:5589561:-1 gene:M01E11.7 11/11 None
M01E11.7c ENSEMBL cdna:known chromosome:CEL140:I:5583734:5597253:-1 gene:M01E11.7 11/11 None
M01E11.7a ENSEMBL cdna:known chromosome:CEL140:I:5583734:5597253:-1 gene:M01E11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172215 4 3 NM_059235 188534_s_at (11)
NM_059236 188534_s_at (11)
NM_059237 188534_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5583733-5589307(-) 93.94 100.0
Public Domain and Genome References
Ensembl M01E11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77615 Temporarily assigned gene name protein 163, isoform a [Caenorhabditis elegans] ref|NP_491637.1| Temporarily Assigned Gene name family member (tag-163) [Caenorhabditis elegans] 0.0
blast AAB37834 Temporarily assigned gene name protein 163, isoform b [Caenorhabditis elegans] ref|NP_491638.1| Temporarily Assigned Gene name family member (tag-163) [Caenorhabditis elegans] 0.0
blast T29327 hypothetical protein M01E11.7a - Caenorhabditis elegans 0.0
blast AAK77616 Temporarily assigned gene name protein 163, isoform c [Caenorhabditis elegans] ref|NP_491636.1| Temporarily Assigned Gene name family member (tag-163) [Caenorhabditis elegans] 0.0
blast CAE68928 Hypothetical protein CBG14907 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 2.9E-19
Pfam IPR000980 EMBL-EBI SH2 motif 2.9E-19
Pfam IPR000980 EMBL-EBI SH2 motif 2.9E-19
Pfam IPR000980 EMBL-EBI SH2 motif 1.3E-11
Pfam IPR000980 EMBL-EBI SH2 motif 2.9E-19
Sequence
Target Sequence 
>C. ELEGANS:188534_S_AT
tgcaataatgagcccgtcttcggttccctatctgcattggtatatcaacattccatcaca
gccttggctcttccaacgaagcttgttcttccggactttgatccagcagctacaccggaa
catttatcagccactcaagcacttttggaacagggagcagcttgtaatgtggtgtacgtg
ggcagtgtcgacgtggaatcgttgaccggcaacgagtgcgtcaagcggagcattgccacg
tgttcgcagagagctattaacggagatagtcgagctgtttcagtgcattttaaggtttca
tcacaaggagttacattaactgataacacgcggaaggtgttcttcaggaggcattttaat
gttcaaagtgtgatttttgctggaatggatccaattgaaaggaggttcgaaaacactcgt
gctctgggattccatgatggatgcatagcacaagctcgattattcgctttcgtcgccaga
attccttcttcatctgaaaacgcgtgccacgtattcgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATAATGAGCCCGTCTTCGGTT 697 575 667 Antisense
GGTTCCCTATCTGCATTGGTATATC 93 507 688 Antisense
GGTATATCAACATTCCATCACAGCC 452 505 705 Antisense
TGTTCTTCCGGACTTTGATCCAGCA 119 563 750 Antisense
ATTTATCAGCCACTCAAGCACTTTT 320 15 788 Antisense
TGTGGTGTACGTGGGCAGTGTCGAC 8 555 834 Antisense
GTCGACGTGGAATCGTTGACCGGCA 610 471 853 Antisense
GTCAAGCGGAGCATTGCCACGTGTT 328 463 886 Antisense
GAAAACACTCGTGCTCTGGGATTCC 84 355 1075 Antisense
TCGCCAGAATTCCTTCTTCATCTGA 150 599 1139 Antisense
AAAACGCGTGCCACGTATTCGCTGA 389 131 1163 Antisense
Sequence Source Affymetrix Proprietary Database