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[188533_at]

Description ZK742.5 /REP_DB=WormBase Gene ID /WP=CE07641 /GEN=lbp-4 /TR=SW:Q23092 /GB=AAB04984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 49      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1078
1 2 3 4 range
A 1008.1
(-3)
P 		2017
(3)
P 		1856.3
(2)
P 		1294.1
(-1.3)
P 		1009
B 1027.9
(-3)
P 		1800
(1.4)
P 		2086
(3)
P 		1363.9
(-1.1)
P 		1058
C 1175.9
(-2.6)
P 		1797.8
(1.5)
P 		2032.4
(3)
P 		1110.1
(-3)
P 		922
avr 1070.6
(-3) 		1871.6
(2.2) 		1991.6
(3) 		1256
(-1.8) 		921

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1816
1 2 3 4 5 6 range
A 1323.8
(-2)
P 		1493.9
(-1.4)
P 		2802.6
(3)
P 		1927
(0.1)
P 		1174.7
(-2.5)
P 		1019.7
(-3)
P 		1783
B 1739.8
(-1.4)
P 		2157.6
(0.3)
P 		2836.1
(3)
P 		1621.5
(-1.8)
P 		1582.3
(-2)
P 		1333
(-3)
P 		1503
C 1294.8
(-2.2)
P 		2156.3
(2.7)
P 		1631.2
(-0.3)
P 		2204.9
(3)
P 		1147.1
(-3)
P 		1586.7
(-0.5)
P 		1058
avr 1452.8
(-2.2) 		1935.9
(0.4) 		2423.3
(3) 		1917.8
(0.3) 		1301.4
(-3) 		1313.1
(-2.9) 		1122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 521
1 2 3 4 range
A 367.1
(0.6)
P 		437.8
(2)
P 		485.3
(3)
P 		189.4
(-3)
P 		296
B 327.8
(-1.8)
P 		444.5
(1.8)
P 		483.4
(3)
P 		290.6
(-3)
P 		193
C 389.2
(-0.7)
P 		516.9
(0.8)
P 		708.3
(3)
P 		187.2
(-3)
P 		521
avr 361.4
(-0.5) 		466.4
(1.3) 		559
(3) 		222.4
(-3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 244
(-3)
P 		531.3
(1.7)
P 		610.3
(3)
P 		488.7
(1)
P 		354.5
(-1.2)
P 		248.3
(-2.9)
P 		366
B 605.4
(0.7)
P 		718.2
(3)
P 		688.7
(2.4)
P 		429.5
(-3)
P 		642.9
(1.4)
P 		497.1
(-1.6)
P 		289
C 479.9
(-0.7)
P 		657.9
(3)
P 		415.2
(-2.1)
P 		443.4
(-1.5)
P 		371.2
(-3)
P 		531.2
(0.3)
P 		287
avr 443.1
(-2.5) 		635.8
(3) 		571.4
(1.2) 		453.9
(-2.2) 		456.2
(-2.1) 		425.5
(-3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11298
Sequence Type Exemplar sequence
Representative Public ID ZK742.5 NCBI
Target Description ZK742.5 /REP_DB=WormBase Gene ID /WP=CE07641 /GEN=lbp-4 /TR=SW:Q23092 /GB=AAB04984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072615 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-4) (lbp-4) mRNA, complete cds. 11/11 None
SNAP00000028068 ENSEMBL cdna:SNAP chromosome:CEL140:V:7823179:7823923:1 11/11 None
GENEFINDER00000028072 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7823179:7823923:1 11/11 None
ZK742.5 ENSEMBL cdna:known chromosome:CEL140:V:7823174:7824067:1 gene:ZK742.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7823179-7823924(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lbp-4
Ensembl ZK742.5
Entrez Gene 179161 Entrez gene
SwissProt Q23092 EMBL-EBI
WormBase CE07641 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04984 Lipid binding protein protein 4 [Caenorhabditis elegans] ref|NP_505016.1| Lipid Binding Protein family member (lbp-4) [Caenorhabditis elegans] sp|Q23092|FABP4_CAEEL Fatty acid-binding protein homolog 1.0E-81
blast CAE73175 Hypothetical protein CBG20572 [Caenorhabditis briggsae] 2.0E-77
blast AAA81433 Lipid binding protein protein 3 [Caenorhabditis elegans] ref|NP_508556.2| Lipid Binding Protein family member (lbp-3) [Caenorhabditis elegans] sp|Q20222|FABP3_CAEEL Fatty acid-binding protein homolog 3 precursor (Lipid binding protein 3) 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:188533_AT
atgtcagtgccagacaagttctttggccgttatcagctcgataaaagcgagaattttgat
gaatttctctcctcgaaaggtgtcaactggttcgtacggcaaatgatcaagttggctgga
ctcactaaaattatctcacaaaatcaagaagctgggaagtacaacatggaaaatctaact
tcaaaaaagaacaccaactatcaggcatgggaacttggaaaaaaattcgaagctcctgga
ttggatggaaatcaacatgagatcactttcgacttcaaagatgaaatcctttcggagcat
catattcgcctgaatgaaccagaaaccagcgcagagacttatttctacactatcgacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCAGTGCCAGACAAGTTCTTTG 703 45 13 Antisense
CAAGTTCTTTGGCCGTTATCAGCTC 581 183 27 Antisense
TTCTCTCCTCGAAAGGTGTCAACTG 58 689 77 Antisense
GTGTCAACTGGTTCGTACGGCAAAT 359 485 92 Antisense
GATCAAGTTGGCTGGACTCACTAAA 311 419 117 Antisense
AGAACACCAACTATCAGGCATGGGA 77 73 200 Antisense
AAAAATTCGAAGCTCCTGGATTGGA 424 129 233 Antisense
AACATGAGATCACTTTCGACTTCAA 428 135 266 Antisense
CCTTTCGGAGCATCATATTCGCCTG 356 267 300 Antisense
GAACCAGAAACCAGCGCAGAGACTT 608 345 328 Antisense
GACTTATTTCTACACTATCGACGAT 120 373 348 Antisense
Sequence Source Affymetrix Proprietary Database