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[188527_s_at]

Description C42D8.5 /REP_DB=WormBase Gene ID /WP=CE06951 /TR=Q18581 /GB=AAA98719.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 57      6grp_cgc > 51      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1505
1 2 3 4 range
A 98.6
(-2.9)
A 		1235
(1.7)
P 		1569.5
(3)
P 		70.7
(-3)
A 		1499
B 134.3
(-2.7)
A 		1337.8
(2.3)
P 		1500.1
(3)
P 		64.5
(-3)
A 		1436
C 135.1
(-2.9)
A 		1171.6
(1.8)
P 		1440.8
(3)
P 		104.5
(-3)
A 		1336
avr 122.7
(-2.8) 		1248.1
(1.9) 		1503.5
(3) 		79.9
(-3) 		1424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 630.5
(0.1)
P 		839.9
(2.2)
P 		492.7
(-1.3)
P 		916.6
(3)
P 		834.1
(2.2)
P 		330
(-3)
P 		587
B 723.6
(1.8)
P 		697.4
(1.5)
P 		763.4
(2.2)
P 		845
(3)
P 		591.6
(0.4)
P 		256.3
(-3)
P 		589
C 1005.2
(3)
P 		890
(2.1)
P 		738.9
(0.9)
P 		916.2
(2.3)
P 		916.7
(2.3)
P 		249.3
(-3)
P 		756
avr 786.4
(2) 		809.1
(2.2) 		665
(0.8) 		892.6
(3) 		780.8
(1.9) 		278.5
(-3) 		614
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 35.9
(-2.6)
A 		268.1
(0.9)
P 		410.3
(3)
P 		10.3
(-3)
A 		400
B 42.8
(-2.5)
A 		330.4
(2.7)
P 		347.6
(3)
P 		13.7
(-3)
A 		334
C 44.7
(-2.7)
A 		336.8
(1)
P 		502.2
(3)
P 		17.6
(-3)
A 		485
avr 41.1
(-2.6) 		311.8
(1.4) 		420
(3) 		13.9
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 116.2
(-2)
P 		298.7
(3)
P 		107.3
(-2.3)
P 		232.5
(1.2)
P 		251.7
(1.7)
P 		80.3
(-3)
P 		218
B 251.8
(3)
P 		232.1
(2.2)
P 		185.4
(0.4)
P 		223.8
(1.9)
P 		240.4
(2.6)
P 		95.6
(-3)
P 		156
C 372.6
(3)
P 		271.6
(0.9)
P 		188.1
(-0.8)
P 		184.2
(-0.9)
P 		296.6
(1.4)
P 		83.4
(-3)
P 		289
avr 246.9
(2.3) 		267.5
(3) 		160.3
(-0.6) 		213.5
(1.2) 		262.9
(2.8) 		86.4
(-3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188527_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16703
Sequence Type Exemplar sequence
Representative Public ID C42D8.5 NCBI
Target Description C42D8.5 /REP_DB=WormBase Gene ID /WP=CE06951 /TR=Q18581 /GB=AAA98719.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029282 NCBI Caenorhabditis elegans ACE(angiotensin converting enzyme)-like Non-peptidase family member (acn-1) (acn-1) mRNA, complete cds. 11/11 None
GENEFINDER00000033887 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5092645:5097034:-1 11/11 None
SNAP00000033876 ENSEMBL cdna:SNAP chromosome:CEL140:X:5092809:5097034:-1 11/11 None
C42D8.5a ENSEMBL cdna:known chromosome:CEL140:X:5092809:5097034:-1 gene:C42D8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029283 7/11 Cross Hyb Matching Probes None
C42D8.5b.2 7/11 Cross Hyb Matching Probes None
C42D8.5b.1 7/11 Cross Hyb Matching Probes None
C42D8.5b.3 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180780 2 1 NM_001029282 188527_s_at (11)
NM_001029283 173654_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5092809-5097035(-) 97.69 100.0
Public Domain and Genome References
Ensembl C42D8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024453 ACE(angiotensin converting enzyme)-like Non-peptidase family member (acn-1) [Caenorhabditis elegans] gb|AAA98719.2| Ace(angiotensin converting enzyme)-like non-peptidase protein 1, isoform a [Caenorhabditis elegans] sp|Q18581|ACN1_CAEEL Inactive angiotensin-converting enzyme-related protein precursor (ACE-like non-metallopeptidase protein 1) 0.0
blast CAE68692 Hypothetical protein CBG14607 [Caenorhabditis briggsae] 0.0
blast NP_001007298 hypothetical protein LOC492331 [Danio rerio] gb|AAH85667.1| Zgc:92514 [Danio rerio] 3.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001548 EMBL-EBI Peptidase M2, peptidyl-dipeptidase A 2.9E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033887 1 888-910
Sequence
Target Sequence 
>C. ELEGANS:188527_S_AT
aagacaccactgagaagcttcgcgagaccatgaagctgggatcttccatcacatggctca
aggctcttgagatgatttctgggaaaggtgaacttgacgctcaaccacttctcgagtact
acgagccactcatcaactggctccgcaataccaatgaaatcgatcaggttgttgttggat
gggacggagaaggaactccattcactgtcgaggagattccaaaaaccagacaaccaggag
atggaggaaatggtttgccaagtgaagatagagtcgcattcccaggaggagaatgcgtga
acggacaagagtgtcttctcgattctcactgcaacggaacaatttgtgtttgcaatgatg
gactctacactttggagatcggaaacactttcaactgtgtcccaggaaatccagctgaca
gcggatttggggatggaaagggaggacttgtcattggattgttcaacaatgaagtcacaa
caccagaaccatcagcagagccagaaccaacagctaagacaaccacaaaaatgccaccac
gagtgagggcagcaacttctccattctcattgtacttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACACCACTGAGAAGCTTCGCGA 510 153 2126 Antisense
GAAGCTGGGATCTTCCATCACATGG 257 343 2157 Antisense
CCATCACATGGCTCAAGGCTCTTGA 202 271 2171 Antisense
AAGGTGAACTTGACGCTCAACCACT 22 161 2210 Antisense
CTCAACCACTTCTCGAGTACTACGA 108 227 2225 Antisense
AGTACTACGAGCCACTCATCAACTG 343 61 2240 Antisense
TCAACTGGCTCCGCAATACCAATGA 266 631 2258 Antisense
CTTCTCGATTCTCACTGCAACGGAA 304 221 2440 Antisense
GAAACACTTTCAACTGTGTCCCAGG 127 357 2507 Antisense
CGAGTGAGGGCAGCAACTTCTCCAT 587 249 2665 Antisense
ACTTCTCCATTCTCATTGTACTTGA 284 103 2680 Antisense
Sequence Source Affymetrix Proprietary Database