[Home] | [Total List]

[188519_at] helicase

Description F59A7.8 /REP_DB=WormBase Gene ID /WP=CE11450 /TR=O16283 /GB=AAB65339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=helicase
Cluster 6grp_total > 99      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 35.2
(-0.8)
A 		3.4
(-3)
A 		3.8
(-3)
A 		88.6
(3)
A 		85
B 36.3
(1.3)
A 		38.9
(1.7)
A 		8.3
(-3)
A 		47.5
(3)
A 		39
C 17
(-2.8)
A 		40.3
(3)
A 		16.4
(-3)
A 		39.2
(2.7)
A 		24
avr 29.5
(-0.5) 		27.5
(-0.8) 		9.5
(-3) 		58.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 14.9
(-2.3)
A 		50.5
(1.3)
A 		8.1
(-3)
A 		11.3
(-2.7)
A 		67.5
(3)
A 		32.7
(-0.5)
A 		59
B 2.5
(-3)
A 		3
(-2.9)
A 		24.2
(1)
A 		34.1
(2.8)
A 		7.5
(-2.1)
A 		35.3
(3)
A 		33
C 20.9
(-2.2)
A 		30.6
(-0.7)
A 		20.8
(-2.2)
A 		15.7
(-3)
A 		54.8
(3)
A 		38.5
(0.5)
A 		39
avr 12.8
(-3) 		28
(-0) 		17.7
(-2) 		20.4
(-1.5) 		43.3
(3) 		35.5
(1.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.8
(2.9)
A 		0.7
(-3)
A 		1
(-2.9)
A 		13
(3)
A 		12
B 11.6
(3)
A 		9.6
(1.8)
A 		1.9
(-3)
A 		10.1
(2.1)
A 		10
C 5.6
(-3)
A 		11.6
(3)
A 		5.7
(-2.9)
A 		6.6
(-2)
A 		6
avr 10
(3) 		7.3
(0.7) 		2.9
(-3) 		9.9
(2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.7
(-2.7)
A 		18
(2.2)
A 		1.8
(-3)
A 		2.9
(-2.6)
A 		20.4
(3)
A 		7.9
(-1)
A 		19
B 0.9
(-3)
A 		1
(-3)
A 		5.9
(-0.6)
A 		9
(1)
A 		3
(-2)
A 		13.2
(3)
A 		12
C 7.8
(-1.1)
A 		9.3
(-0.5)
A 		5.3
(-2.1)
A 		3.2
(-3)
A 		17.7
(3)
A 		12.9
(1)
A 		15
avr 3.8
(-3) 		9.4
(0.4) 		4.3
(-2.7) 		5
(-2.3) 		13.7
(3) 		11.3
(1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15251
Sequence Type Exemplar sequence
Representative Public ID F59A7.8 NCBI
Target Description F59A7.8 /REP_DB=WormBase Gene ID /WP=CE11450 /TR=O16283 /GB=AAB65339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071147 NCBI Caenorhabditis elegans F59A7.8 (helicase) mRNA, complete cds. 11/11 None
GENEFINDER00000021268 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2008710:2011198:1 11/11 None
F59A7.8 ENSEMBL cdna:known chromosome:CEL140:V:2008518:2011474:1 gene:F59A7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021253 3/11 Cross Hyb Matching Probes None
SNAP00000021254 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2008709-2011198(+) 100.0 100.0
Public Domain and Genome References
Gene Title helicase
Ensembl F59A7.8
Entrez Gene 178681 Entrez gene
SwissProt O16283 EMBL-EBI
WormBase CE11450 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65339 Hypothetical protein F59A7.8 [Caenorhabditis elegans] ref|NP_503548.1| F59A7.8 [Caenorhabditis elegans] 0.0
blast AAM15608 Hypothetical protein T23H2.3 [Caenorhabditis elegans] ref|NP_491854.2| T23H2.3a [Caenorhabditis elegans] 4.0E-88
blast T28968 hypothetical protein T23H2.3 - Caenorhabditis elegans 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.0E-19
Pfam IPR000330 EMBL-EBI SNF2 related domain 9.7E-18
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.1E-19
Sequence
Target Sequence 
>C. ELEGANS:188519_AT
tggaagcagctctgtcattgtctcccaatggacttctgttctgcgtctcgtgcaaagaca
ttcaagaaggaggccacgggtacacatctatcaccggagaggtagccataaaagatcggc
aagaacgagtagacagcttcaaccaagaaaagggcggagcccaggatatgctcctctcat
tgacggccggaggtgtggggctcaatttgattggcgggaatcatctgattatggtcgatt
tgcactggaatcctgcactagagcagcaggcgtgtgatcgcatttatcgaatgggacaga
agaaggaagtccatattcatcgactcatcgtgaaggaaaccattgagcaacgcgtcatga
gcctccaggagaagaagctcgcgttggcagcttcagtgttggaaggatcggcaactcgtg
gaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCAGCTCTGTCATTGTCTCC 325 547 1076 Antisense
TTGTCTCCCAATGGACTTCTGTTCT 689 705 1093 Antisense
TTCTGTTCTGCGTCTCGTGCAAAGA 89 695 1109 Antisense
AAGGAGGCCACGGGTACACATCTAT 176 161 1142 Antisense
GGCGGAGCCCAGGATATGCTCCTCT 56 541 1228 Antisense
TTGACGGCCGGAGGTGTGGGGCTCA 486 679 1255 Antisense
ACTAGAGCAGCAGGCGTGTGATCGC 75 101 1332 Antisense
GTCCATATTCATCGACTCATCGTGA 307 477 1384 Antisense
CATTGAGCAACGCGTCATGAGCCTC 275 217 1416 Antisense
TCGCGTTGGCAGCTTCAGTGTTGGA 592 597 1454 Antisense
GGAAGGATCGGCAACTCGTGGAATG 354 527 1476 Antisense
Sequence Source Affymetrix Proprietary Database