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[188518_at]

Description Y116A8C.27_rc /REP_DB=WormBase Gene ID /WP=CE23335 /TR=Q9U2U3 /GB=CAB55134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 12      6grp_total > 02      4grp_total > 21      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 107.4
(2.5)
P 		109.4
(3)
P 		85.2
(-3)
P 		103.8
(1.6)
A 		24
B 116.3
(3)
P 		93.1
(0.7)
P 		57
(-3)
P 		96.3
(1)
A 		59
C 107
(-1.1)
P 		76
(-3)
A 		83.3
(-2.5)
P 		172.8
(3)
P 		97
avr 110.2
(1.3) 		92.8
(-0.8) 		75.2
(-3) 		124.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 142.9
(3)
M 		87.9
(-0.5)
P 		70.5
(-1.6)
P 		56.9
(-2.4)
A 		101.1
(0.4)
P 		48.1
(-3)
A 		95
B 64.6
(-2.6)
P 		73.9
(-0.7)
P 		67.4
(-2)
P 		93
(3)
P 		77.3
(-0.1)
P 		62.3
(-3)
P 		31
C 59.7
(-1.8)
P 		139.9
(3)
P 		56.5
(-1.9)
P 		70.2
(-1.1)
P 		38.6
(-3)
P 		54.3
(-2.1)
P 		101
avr 89.1
(1.5) 		100.6
(3) 		64.8
(-1.7) 		73.4
(-0.6) 		72.3
(-0.7) 		54.9
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 39.1
(3)
P 		23.7
(-0.9)
P 		22.3
(-1.2)
P 		15.2
(-3)
A 		24
B 37.1
(3)
P 		23
(-0.5)
P 		13.2
(-3)
P 		20.5
(-1.2)
A 		24
C 35.4
(3)
P 		21.9
(-3)
A 		29
(0.2)
P 		29.1
(0.2)
P 		14
avr 37.2
(3) 		22.9
(-2.5) 		21.5
(-3) 		21.6
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 26.3
(1.5)
M 		31.3
(3)
P 		15.4
(-1.9)
P 		14.4
(-2.2)
A 		30.5
(2.8)
P 		11.7
(-3)
A 		20
B 22.5
(-0.6)
P 		24.6
(0.3)
P 		16.4
(-3)
P 		24.6
(0.3)
P 		31.4
(3)
P 		23.2
(-0.3)
P 		15
C 22.1
(-1.1)
P 		42.7
(3)
P 		14.4
(-2.6)
P 		14.1
(-2.7)
P 		12.5
(-3)
P 		18.2
(-1.9)
P 		30
avr 23.6
(-0.2) 		32.9
(3) 		15.4
(-3) 		17.7
(-2.2) 		24.8
(0.2) 		17.7
(-2.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28130
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.27 NCBI
Target Description Y116A8C.27_rc /REP_DB=WormBase Gene ID /WP=CE23335 /TR=Q9U2U3 /GB=CAB55134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y116A8C.27
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y116A8C.27 Y116A8C.27_rc /REP_DB=WormBase Gene ID /WP=CE23335 /TR=Q9U2U3 /GB=CAB55134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070628 10/11 Negative Strand Matching Probes A 
SNAP00000004100 10/11 Negative Strand Matching Probes None
GENEFINDER00000004172 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17090704-17092679(+) 83.97 91.99
Public Domain and Genome References
Ensembl Y116A8C.27
Sequence
Target Sequence 
>C. ELEGANS:188518_AT
gggaaattgtgctgacgaatccatctgtcgattttttccttatcgttctcgctggccacg
tcacagtctaaaatattctcgctggggcgaactttaattcccaaatcgttattcaaattc
ttgataagcggagcccatttctcctcctggtagcgatgaagtttcgagctttccgtattg
aagaacaatacagtgtcaccttccacgtaatcgaggattttttgagaaattgtgtcgatt
ttcatttcagacatcatattttgtttttgaaataaaaaaaatactttttcagaaataaat
ggagaaaaatatgttttcttttttgaaaaacttttttcagaaatgaaaacaattttttta
aaagaaaatagagaaaagtaatttttttttgttgaaaaacttgcagtctgttccaatgga
ttatcctgagcagtgaatgcaagaccagtcaatctcatttgtcccaactgcagaaattcg
tcttgtgatgaccattcttcagcaattgccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAATTGTGCTGACGAATCCATC 461 493 266 Antisense
CGAATCCATCTGTCGATTTTTTCCT 26 255 281 Antisense
GCTGGCCACGTCACAGTCTAAAATA 627 287 316 Antisense
TGATAAGCGGAGCCCATTTCTCCTC 362 565 387 Antisense
GAAGTTTCGAGCTTTCCGTATTGAA 646 335 423 Antisense
ATACAGTGTCACCTTCCACGTAATC 337 23 453 Antisense
AAACTTGCAGTCTGTTCCAATGGAT 101 125 662 Antisense
GACCAGTCAATCTCATTTGTCCCAA 664 383 708 Antisense
TTGTCCCAACTGCAGAAATTCGTCT 465 703 724 Antisense
AAATTCGTCTTGTGATGACCATTCT 463 115 739 Antisense
TGACCATTCTTCAGCAATTGCCAGT 537 569 754 Antisense
Sequence Source Affymetrix Proprietary Database