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[188515_s_at]

Description R151.7 /REP_DB=WormBase Gene ID /WP=CE25975 /TR=Q21998 /GB=AAK29856.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=HSP C62.5
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 29      4grp_high_8_8 > 03      6grp_highest_nonorm > 71      6grp_total > 55      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 508.9
(-0.5)
P 		419.1
(-2.4)
P 		393.1
(-3)
P 		666.2
(3)
P 		273
B 506.6
(0.6)
P 		410
(-3)
P 		570.4
(3)
P 		509.9
(0.7)
P 		160
C 432.7
(0.5)
P 		378.3
(-3)
P 		409.9
(-1)
P 		472.6
(3)
P 		94
avr 482.7
(0.3) 		402.5
(-3) 		457.8
(-0.7) 		549.6
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 410
(1.3)
P 		356.4
(0.1)
P 		492.2
(3)
P 		409.5
(1.2)
P 		209.4
(-3)
P 		293.4
(-1.2)
P 		283
B 389.3
(0.9)
P 		424.4
(1.9)
P 		460.4
(3)
P 		356.1
(-0.1)
P 		260.7
(-3)
P 		385.7
(0.8)
P 		200
C 291.5
(-1)
P 		424.9
(2.1)
P 		391.8
(1.4)
P 		366.3
(0.8)
P 		204.5
(-3)
P 		462.3
(3)
P 		258
avr 363.6
(0.7) 		401.9
(1.8) 		448.1
(3) 		377.3
(1.1) 		224.9
(-3) 		380.5
(1.2) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 185.3
(3)
P 		91
(-3)
P 		102.8
(-2.2)
P 		97.5
(-2.6)
P 		94
B 161.5
(3)
P 		101.3
(-3)
P 		132.2
(0.1)
P 		108.7
(-2.3)
P 		60
C 143.2
(3)
P 		108.8
(-0.3)
P 		142.9
(3)
P 		79.7
(-3)
P 		64
avr 163.3
(3) 		100.4
(-2.6) 		126
(-0.3) 		95.3
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 75.6
(-1.8)
P 		126.8
(3)
P 		107.2
(1.2)
P 		103.9
(0.8)
P 		63.2
(-3)
P 		71.4
(-2.2)
P 		64
B 135.5
(2)
P 		141.3
(2.7)
P 		111.8
(-0.9)
P 		94.3
(-3)
P 		105.9
(-1.6)
P 		143.8
(3)
P 		50
C 108
(-0.2)
P 		129.7
(1.3)
P 		99.7
(-0.7)
P 		73.7
(-2.5)
P 		66.2
(-3)
P 		154.7
(3)
P 		89
avr 106.4
(0.1) 		132.6
(3) 		106.2
(0.1) 		90.6
(-1.6) 		78.4
(-3) 		123.3
(2) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188515_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6807
Sequence Type Exemplar sequence
Representative Public ID R151.7 NCBI
Target Description R151.7 /REP_DB=WormBase Gene ID /WP=CE25975 /TR=Q21998 /GB=AAK29856.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=HSP C62.5
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171881 NCBI Caenorhabditis elegans R151.7a (R151.7) mRNA, complete cds. 11/11 None
SNAP00000037938 ENSEMBL cdna:SNAP chromosome:CEL140:III:7223277:7226631:-1 11/11 None
GENEFINDER00000037949 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7223277:7226613:-1 11/11 None
R151.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:7223158:7226633:-1 gene:R151.7 11/11 None
R151.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:7223158:7226631:-1 gene:R151.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171188 1/11 Cross Hyb Matching Probes None
AF143151 8/11 Cross Hyb Matching Probes None
R151.7b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176019 2 1 NM_171881 188515_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7223274-7226584(-) 100.0 100.0
Public Domain and Genome References
Ensembl R151.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29856 Hypothetical protein R151.7a [Caenorhabditis elegans] ref|NP_741220.1| R151.7a [Caenorhabditis elegans] 0.0
blast T16767 hypothetical protein R151.7 - Caenorhabditis elegans 0.0
blast CAE57604 Hypothetical protein CBG00585 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 1.8E-5
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 2.1E-37
Pfam IPR003594 EMBL-EBI ATP-binding region, ATPase-like 2.1E-10
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 1.8E-5
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 2.1E-37
Pfam IPR003594 EMBL-EBI ATP-binding region, ATPase-like 2.1E-10
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 1.8E-5
Pfam IPR001404 EMBL-EBI Heat shock protein Hsp90 2.1E-37
Pfam IPR003594 EMBL-EBI ATP-binding region, ATPase-like 2.1E-10
Sequence
Target Sequence 
>C. ELEGANS:188515_S_AT
gtcaactagctgaatcatctccttattatgaagtcatcaagtcacaaaataaggaagttc
tgtttctttatgatccagccgacgaagttgtgttcttgggtcttgggcagtttggaatga
aacaattagttccagttgaaaagtgggctcaagaagaagctgaaaagactggaactgatg
ataagaaggatactagtcaagaagatttccgagataatgagaagaaagagctcctcgatt
ggatgaaagaaacacttggaagtgttcgagtttctgaaatttctggcaaccatcgtccga
gtgagcatccagtcatggtgactgtgctcgatatgggagcggctcgtcatttcttgagaa
ccggagaaatcaaggatatggagcatttagtgtacttcaaaccacatgttcatgttaatt
taacacatccattggtcaaggcaatgtacaaaatgagaaaaacagataaggaaaccgcgg
ctattttggctgagcagatttatgacaatgctctaatcacagctggattgattaaagata
caagccgaatggtcggaagattgaacaaattattgacttccttggctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACTAGCTGAATCATCTCCTTA 205 465 1370 Antisense
TGTTTCTTTATGATCCAGCCGACGA 325 561 1430 Antisense
GAAGTTGTGTTCTTGGGTCTTGGGC 227 337 1453 Antisense
GAAATTTCTGGCAACCATCGTCCGA 332 363 1645 Antisense
TCCGAGTGAGCATCCAGTCATGGTG 624 595 1665 Antisense
GTCATGGTGACTGTGCTCGATATGG 316 467 1681 Antisense
GCGGCTCGTCATTTCTTGAGAACCG 94 295 1708 Antisense
GTGTACTTCAAACCACATGTTCATG 125 487 1759 Antisense
GAAACCGCGGCTATTTTGGCTGAGC 541 357 1840 Antisense
GACAATGCTCTAATCACAGCTGGAT 310 365 1873 Antisense
CAAATTATTGACTTCCTTGGCTGGA 434 193 1935 Antisense
Sequence Source Affymetrix Proprietary Database