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[188514_at]

Description F43C11.12_rc /REP_DB=WormBase Gene ID /WP=CE23719 /TR=Q9U5B1 /GB=AAF16614.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 6.4
(-3)
A 		21.2
(3)
A 		11.4
(-1)
A 		14.5
(0.3)
A 		15
B 5.6
(0.3)
A 		2.2
(-3)
A 		8.3
(3)
A 		4.7
(-0.5)
A 		6
C 5
(-2.9)
A 		9.8
(-2.2)
A 		4.2
(-3)
A 		44.8
(3)
A 		41
avr 5.7
(-3) 		11.1
(-0.9) 		8
(-2.1) 		21.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.7
(-3)
A 		4.8
(-3)
A 		5.2
(-2.9)
A 		7.2
(-2.6)
A 		10.7
(-2)
A 		39.6
(3)
A 		35
B 2.2
(-3)
A 		7.4
(-0.5)
A 		8
(-0.2)
A 		11.4
(1.5)
A 		4.9
(-1.7)
A 		14.6
(3)
A 		12
C 2.1
(-3)
A 		6.1
(-1.7)
A 		18.2
(2.1)
A 		13.8
(0.7)
A 		5.9
(-1.8)
A 		21.2
(3)
A 		19
avr 3
(-3) 		6.1
(-2.2) 		10.5
(-1) 		10.8
(-0.9) 		7.2
(-1.9) 		25.1
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-2.5)
A 		4.6
(3)
A 		3
(-0.8)
A 		2.1
(-3)
A 		3
B 1.8
(2.6)
A 		0.5
(-3)
A 		1.9
(3)
A 		1
(-0.9)
A 		1
C 1.6
(-2.9)
A 		2.8
(-1.7)
A 		1.5
(-3)
A 		7.6
(3)
A 		6
avr 1.9
(-3) 		2.6
(-0.5) 		2.1
(-2.3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.7
(-2.4)
A 		1.1
(-2.9)
A 		1.8
(-2.4)
A 		3.2
(-1.4)
A 		9.6
(3)
A 		9
B 0.8
(-3)
A 		2.5
(-0.8)
A 		2
(-1.5)
A 		3
(-0.2)
A 		2
(-1.5)
A 		5.5
(3)
A 		5
C 0.8
(-3)
A 		1.9
(-2)
A 		4.6
(0.6)
A 		2.8
(-1.1)
A 		1.9
(-2)
A 		7.1
(3)
A 		6
avr 0.8
(-3) 		2
(-1.9) 		2.6
(-1.4) 		2.5
(-1.5) 		2.4
(-1.5) 		7.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28123
Sequence Type Exemplar sequence
Representative Public ID F43C11.12 NCBI
Target Description F43C11.12_rc /REP_DB=WormBase Gene ID /WP=CE23719 /TR=Q9U5B1 /GB=AAF16614.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F43C11.12
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F43C11.12 F43C11.12_rc /REP_DB=WormBase Gene ID /WP=CE23719 /TR=Q9U5B1 /GB=AAF16614.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061854 9/11 Negative Strand Matching Probes A 
SNAP00000013003 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2365652-2366269(+) 85.79 100.0
Public Domain and Genome References
Ensembl F43C11.12
Sequence
Target Sequence 
>C. ELEGANS:188514_AT
gttttatatccgttcaatgagccatttgtgtaactaggtggatctttgttgaatgtaatt
ccatttggatatttggtaagtttccaaacaccgtcatcacatatgatcccaaagtactca
gataggctggcaccacccatttcttccagtgaggttggaggactgatctccagtgcattc
tgaggaatcaagttaccaggtggagggatttcgctgtattgaaattgactgaagaacgat
ggatatgtattttcggggcaggttagcatgaagcatccgtctttctcaatgtattccgca
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTATATCCGTTCAATGAGCCAT 93 449 41 Antisense
GTAAGTTTCCAAACACCGTCATCAC 243 463 116 Antisense
ACACCGTCATCACATATGATCCCAA 58 111 128 Antisense
AGTACTCAGATAGGCTGGCACCACC 590 61 153 Antisense
ACCACCCATTTCTTCCAGTGAGGTT 387 85 172 Antisense
GATCTCCAGTGCATTCTGAGGAATC 190 419 205 Antisense
GAGGAATCAAGTTACCAGGTGGAGG 377 405 222 Antisense
AGGTGGAGGGATTTCGCTGTATTGA 463 57 238 Antisense
GATGGATATGTATTTTCGGGGCAGG 660 407 278 Antisense
TAGCATGAAGCATCCGTCTTTCTCA 104 653 304 Antisense
GTCTTTCTCAATGTATTCCGCAGGA 465 469 319 Antisense
Sequence Source Affymetrix Proprietary Database