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[188512_at] chitinase

Description R09D1.3 /REP_DB=WormBase Gene ID /WP=CE03544 /TR=Q21859 /GB=CAA93863.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 06      6grp_total > 78      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 58.6
(-2.9)
P 		62.1
(-2.9)
P 		50.5
(-3)
P 		579.9
(3)
P 		529
B 55.3
(-2.3)
A 		59.5
(-2.3)
A 		6.5
(-3)
A 		448.2
(3)
P 		442
C 43.5
(-3)
P 		50.7
(-2.9)
M 		46
(-3)
P 		420.8
(3)
P 		377
avr 52.5
(-2.8) 		57.4
(-2.7) 		34.3
(-3) 		483
(3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 77.7
(-1.7)
A 		38.1
(-3)
A 		76.1
(-1.7)
P 		39.8
(-2.9)
P 		111.6
(-0.5)
P 		215.8
(3)
P 		178
B 9.8
(-3)
A 		52.1
(-2)
M 		49.2
(-2.1)
A 		43.8
(-2.2)
A 		137.4
(-0.1)
P 		272.4
(3)
P 		263
C 49.5
(-3)
P 		76.8
(-1.9)
P 		58.4
(-2.6)
P 		75.9
(-1.9)
P 		92.1
(-1.3)
P 		200.1
(3)
P 		151
avr 45.7
(-3) 		55.7
(-2.7) 		61.2
(-2.5) 		53.2
(-2.8) 		113.7
(-0.8) 		229.4
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 21.3
(-2.3)
P 		13.5
(-3)
P 		13.2
(-3)
P 		84.9
(3)
P 		72
B 17.6
(-2)
A 		14.7
(-2.2)
A 		1.5
(-3)
A 		95.5
(3)
P 		94
C 14.4
(-3)
P 		14.6
(-3)
M 		16
(-2.8)
P 		71
(3)
P 		57
avr 17.8
(-2.4) 		14.3
(-2.7) 		10.2
(-3) 		83.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 14.3
(-2.4)
A 		13.6
(-2.5)
A 		16.6
(-2.1)
P 		10.1
(-3)
P 		33.7
(0.3)
P 		52.5
(3)
P 		42
B 3.4
(-3)
A 		17.4
(-2.1)
M 		12
(-2.5)
A 		11.6
(-2.5)
A 		55.8
(0.2)
P 		101.6
(3)
P 		98
C 18.3
(-2.6)
P 		23.4
(-2)
P 		14.9
(-3)
P 		15.3
(-3)
P 		29.8
(-1.3)
P 		67
(3)
P 		52
avr 12
(-3) 		18.1
(-2.4) 		14.5
(-2.8) 		12.3
(-3) 		39.8
(-0.3) 		73.7
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3733
Sequence Type Exemplar sequence
Representative Public ID R09D1.3 NCBI
Target Description R09D1.3 /REP_DB=WormBase Gene ID /WP=CE03544 /TR=Q21859 /GB=CAA93863.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063618 NCBI Caenorhabditis elegans R09D1.3 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010204 ENSEMBL cdna:SNAP chromosome:CEL140:II:9438520:9443531:-1 11/11 None
GENEFINDER00000010213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9438520:9443531:-1 11/11 None
R09D1.3 ENSEMBL cdna:known chromosome:CEL140:II:9438520:9440069:-1 gene:R09D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9438516-9440066(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.3
Entrez Gene 187733 Entrez gene
SwissProt Q21859 EMBL-EBI
WormBase CE03544 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 0.0
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 0.0
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 0.0
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 1.0E-178
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.2E-117
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-9
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.7E-81
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.0E-109
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-97
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.2E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496019.1 1 33-55
R09D1.3 1 33-55
SNAP00000010204 1 31-53
GENEFINDER00000010213 2 31-53,417-439
Sequence
Target Sequence 
>C. ELEGANS:188512_AT
gggaatcaggctttgatcttgatgcaattcaaaaacatgtggactttattaatgtacact
caatggattatgcgaaaccgttgccgaatcaatggggtacacctactggaccatctgcat
ccatgaacttcaacattggtcttaggcaacattataatgttgactggactatgaagcatt
atacttgtgaactgaagaaaccgagcatgattaatctagttatcccgttctatgtgagaa
tgtggaaaaatgttcagaaagcgatagataacagaacagaagtgttcagaaatgttgagt
taaaagataatgaagttgaagggagatcgcaactttctcgatatactgtcgagcatgaag
atatggaattgtccccggaatcatgggacaatgcaacacaaactccatatgtattggatc
tgaagacaagaacgttttttacgtatgaaaatgagaaaagtataaaggtgaagctagatt
atgtaaacaaaatggatttgggtggagtttggatctggtcagtggatatggatgatcgac
tcaacactctttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAATCAGGCTTTGATCTTGATGC 437 493 701 Antisense
GGATTATGCGAAACCGTTGCCGAAT 183 509 765 Antisense
ACCGTTGCCGAATCAATGGGGTACA 30 81 777 Antisense
GACCATCTGCATCCATGAACTTCAA 597 383 809 Antisense
GAACTTCAACATTGGTCTTAGGCAA 564 347 825 Antisense
AATCTAGTTATCCCGTTCTATGTGA 693 167 913 Antisense
GAAGGGAGATCGCAACTTTCTCGAT 697 333 1018 Antisense
TCGCAACTTTCTCGATATACTGTCG 198 599 1027 Antisense
GATATGGAATTGTCCCCGGAATCAT 86 425 1060 Antisense
GGGACAATGCAACACAAACTCCATA 268 493 1085 Antisense
GGATGATCGACTCAACACTCTTTTA 380 511 1230 Antisense
Sequence Source Affymetrix Proprietary Database