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[188511_s_at] chitinase

Description C51E3.8 /REP_DB=WormBase Gene ID /WP=CE08942 /TR=O01981 /GB=CAB01643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 38      6grp_total > 94      4grp_total > 42      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 58.2
(-3)
P 		92.5
(3)
P 		85.9
(1.8)
P 		90.5
(2.7)
P 		34
B 78.7
(0.2)
P 		120.3
(3)
P 		83.4
(0.5)
P 		31.2
(-3)
A 		89
C 62.2
(-3)
P 		139.2
(3)
P 		129.4
(2.2)
P 		115
(1.1)
P 		77
avr 66.4
(-3) 		117.3
(3) 		99.6
(0.9) 		78.9
(-1.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 61.1
(-1.2)
A 		81
(0.3)
P 		38.3
(-3)
P 		64.1
(-1)
P 		115
(3)
P 		97.7
(1.6)
P 		77
B 50.7
(-3)
P 		73.5
(-0.8)
P 		58.1
(-2.3)
P 		111.8
(3)
P 		75.9
(-0.5)
P 		64.9
(-1.6)
P 		61
C 75.7
(-1.1)
P 		74.2
(-1.3)
P 		60.2
(-3)
A 		99.9
(1.9)
P 		109.2
(3)
P 		70.1
(-1.8)
P 		49
avr 62.5
(-1.7) 		76.2
(0) 		52.2
(-3) 		91.9
(2) 		100
(3) 		77.6
(0.2) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 21.2
(2.2)
P 		20.1
(1.5)
P 		22.5
(3)
P 		13.2
(-3)
P 		9
B 25.1
(1.8)
P 		29.7
(3)
P 		19.3
(0.3)
P 		6.7
(-3)
A 		23
C 20.6
(-2.7)
P 		40
(1.8)
P 		45.1
(3)
P 		19.4
(-3)
P 		26
avr 22.3
(0.3) 		29.9
(3) 		29
(2.7) 		13.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.3
(-2.3)
A 		28.8
(1.7)
P 		8.4
(-3)
P 		16.2
(-1.2)
P 		34.7
(3)
P 		23.8
(0.5)
P 		26
B 17.6
(-1.7)
P 		24.5
(0.7)
P 		14.1
(-3)
P 		29.6
(2.6)
P 		30.8
(3)
P 		24.2
(0.6)
P 		17
C 28
(0.8)
P 		22.6
(-0.8)
P 		15.3
(-3)
A 		20.1
(-1.6)
P 		35.3
(3)
P 		23.5
(-0.5)
P 		20
avr 19
(-1.2) 		25.3
(0.6) 		12.6
(-3) 		22
(-0.3) 		33.6
(3) 		23.8
(0.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188511_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11775
Sequence Type Exemplar sequence
Representative Public ID C51E3.8 NCBI
Target Description C51E3.8 /REP_DB=WormBase Gene ID /WP=CE08942 /TR=O01981 /GB=CAB01643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073206(11), NM_001028464(11), NM_001028463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073206 NCBI Caenorhabditis elegans C51E3.8 (chitinase) mRNA, complete cds. 11/11 A 
NM_001028464 NCBI Caenorhabditis elegans C08B6.4b (chitinase) mRNA, complete cds. 11/11 None
NM_001028463 NCBI Caenorhabditis elegans C08B6.4a (chitinase) mRNA, complete cds. 11/11 None
SNAP00000004950 ENSEMBL cdna:SNAP chromosome:CEL140:V:10118177:10119793:1 11/11 None
GENEFINDER00000004969 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10118177:10119793:1 11/11 None
SNAP00000031196 ENSEMBL cdna:SNAP chromosome:CEL140:V:10146989:10147659:-1 11/11 None
C08B6.4b ENSEMBL cdna:known chromosome:CEL140:V:10117346:10119894:1 gene:C08B6.4 11/11 None
C08B6.4a ENSEMBL cdna:known chromosome:CEL140:V:10117394:10119793:1 gene:C08B6.4 11/11 None
C51E3.8 ENSEMBL cdna:known chromosome:CEL140:V:10146989:10148146:-1 gene:C51E3.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070990 4/11 Cross Hyb Matching Probes B 
SNAP00000016427 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016437 4/11 Cross Hyb Matching Probes None
Y50D4A.3 4/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10146988-10148146(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08B6.4
C51E3.8
Entrez Gene 183709 Entrez gene
SwissProt O01981 EMBL-EBI
WormBase CE08942 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6032 chitin catabolism inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4568 chitinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 0.0
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 0.0
blast CAE64733 Hypothetical protein CBG09520 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Sequence
Target Sequence 
>C. ELEGANS:188511_S_AT
ttcccatttgccaatcttggatggggtccttcgagttgctggccatattcttacgatgtt
ttcaaaattgcatccagatactttccagaatttggaacttcgatcaatgtcaacaatact
atgtatatactgcatgaaaataagaaacgagatttgacggctttctttgcccatgctatt
caagaaacttcaaaattgatgaatttcagacatcagtccgatcaagatgcatcaaactgt
ttctaccgtggaggattttataactggtttgaaagaggaccaacaagtagctttttggac
cctaaaactcctggttatactccagccgacggaaactcatgtgcatcttctggtctttat
tgttctgcttctgatcaaataacttatttctatccatgctcaaattcaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCATTTGCCAATCTTGGATGGG 238 697 244 Antisense
CTTGGATGGGGTCCTTCGAGTTGCT 549 201 259 Antisense
GAGGACCAACAAGTAGCTTTTTGGA 111 405 518 Antisense
AAAACTCCTGGTTATACTCCAGCCG 84 131 547 Antisense
TCCTGGTTATACTCCAGCCGACGGA 376 585 552 Antisense
CTGGTTATACTCCAGCCGACGGAAA 374 239 554 Antisense
TGGTCTTTATTGTTCTGCTTCTGAT 695 551 594 Antisense
TTCTGCTTCTGATCAAATAACTTAT 283 693 606 Antisense
AAATAACTTATTTCTATCCATGCTC 198 117 620 Antisense
TAACTTATTTCTATCCATGCTCAAA 165 639 623 Antisense
TTCTATCCATGCTCAAATTCAACAA 211 691 631 Antisense
Sequence Source Affymetrix Proprietary Database