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[188510_at] chitinase

Description C51E3.8 /REP_DB=WormBase Gene ID /WP=CE08942 /TR=O01981 /GB=CAB01643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 19      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		2.8
(1.4)
A 		3.5
(3)
A 		2.7
(1.2)
A 		3
B 2.3
(-0.3)
A 		4
(2.7)
A 		4.2
(3)
A 		0.7
(-3)
A 		4
C 0.5
(-3)
A 		9.4
(3)
A 		1.9
(-2.1)
A 		4.1
(-0.6)
A 		9
avr 1.2
(-3) 		5.4
(3) 		3.2
(-0.1) 		2.5
(-1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.9
(-2.3)
A 		0.7
(-3)
A 		2.7
(-2.3)
A 		7.3
(-0.8)
A 		18.4
(3)
A 		2.3
(-2.5)
A 		18
B 20.5
(3)
A 		5.3
(-1.6)
A 		2.6
(-2.5)
A 		1.5
(-2.8)
A 		0.8
(-3)
A 		12.5
(0.6)
A 		20
C 9.8
(3)
A 		1.3
(-3)
A 		3.8
(-1.2)
A 		7
(1)
A 		1.5
(-2.9)
A 		3
(-1.8)
A 		9
avr 11.1
(3) 		2.4
(-3) 		3
(-2.6) 		5.3
(-1) 		6.9
(0.1) 		5.9
(-0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.3
(-3)
A 		0.6
(-0)
A 		0.9
(3)
A 		0.4
(-2)
A 		1
B 0.7
(0.8)
A 		1
(3)
A 		1
(3)
A 		0.2
(-3)
A 		1
C 0.2
(-3)
A 		2.7
(3)
A 		0.7
(-1.8)
A 		0.7
(-1.8)
A 		3
avr 0.4
(-3) 		1.4
(3) 		0.9
(0) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		1.9
(-1.1)
A 		5.5
(3)
A 		0.6
(-2.5)
A 		5
B 7.1
(3)
A 		1.8
(-1.7)
A 		0.6
(-2.7)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		4.6
(0.8)
A 		7
C 3.6
(3)
A 		0.4
(-3)
A 		1
(-1.9)
A 		1.4
(-1.1)
A 		0.5
(-2.8)
A 		1
(-1.9)
A 		3
avr 3.7
(3) 		0.8
(-2.8) 		0.7
(-3) 		1.2
(-2) 		2.1
(-0.2) 		2.1
(-0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11775
Sequence Type Exemplar sequence
Representative Public ID C51E3.8 NCBI
Target Description C51E3.8 /REP_DB=WormBase Gene ID /WP=CE08942 /TR=O01981 /GB=CAB01643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073206 NCBI Caenorhabditis elegans C51E3.8 (chitinase) mRNA, complete cds. 11/11 A 
SNAP00000031196 ENSEMBL cdna:SNAP chromosome:CEL140:V:10146989:10147659:-1 10/11 None
C51E3.8 ENSEMBL cdna:known chromosome:CEL140:V:10146989:10148146:-1 gene:C51E3.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10146988-10148146(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C51E3.8
Entrez Gene 183709 Entrez gene
SwissProt O01981 EMBL-EBI
WormBase CE08942 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6032 chitin catabolism inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4568 chitinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01643 Hypothetical protein C51E3.8 [Caenorhabditis elegans] ref|NP_505607.1| C51E3.8 [Caenorhabditis elegans] 1.0E-164
blast CAB01643 Hypothetical protein C51E3.8 [Caenorhabditis elegans] ref|NP_505607.1| C51E3.8 [Caenorhabditis elegans] 1.0E-119
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 1.0E-105
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 1.0E-105
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 2.0E-88
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 2.0E-88
Sequence
Target Sequence 
>C. ELEGANS:188510_AT
aaactagaatgctggttcacgagagaaatgtttgaagacctgttcccatttgccaatctt
ggatggggtccttcgagttgctggccatattcttacgatgttttcaaaattgcatccaga
tactttccagaatttggaacttcgatcaatgtcaacaatactatgtatatactgcatgaa
aataagaaacgagatttgacggctttctttgcccatgctattcaagaaacttcaaaattg
atgaatttcagacatcagtccgatcaagatgcatcaaactgtttctaccgtggaggattt
tataactggtttgaaagaggaccaacaagtagctttttggaccctaaaactcctggttat
actccagccgacggaaactcatgtgcatcttctggtctttattgttctgcttctgatcaa
ataacttatttctatccatgctcaaattcaacaatttcaaacactgttgcttcccataga
ggatgctattttggacgcggaacaattcaaatttcgtacaactacaactacggacaattc
caggattccagaacattgaaaaaaaaaactaataattcttctgcatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTAGAATGCTGGTTCACGAGAG 101 127 202 Antisense
TTCGATCAATGTCAACAATACTATG 604 695 342 Antisense
GACATCAGTCCGATCAAGATGCATC 34 371 452 Antisense
GAAACTCATGTGCATCTTCTGGTCT 212 357 575 Antisense
TTCAAACACTGTTGCTTCCCATAGA 634 685 657 Antisense
GTTGCTTCCCATAGAGGATGCTATT 561 439 667 Antisense
GGATGCTATTTTGGACGCGGAACAA 237 513 682 Antisense
GACGCGGAACAATTCAAATTTCGTA 276 381 695 Antisense
CTACGGACAATTCCAGGATTCCAGA 8 227 729 Antisense
AATTCCAGGATTCCAGAACATTGAA 703 175 737 Antisense
AAACTAATAATTCTTCTGCATTTCA 99 129 767 Antisense
Sequence Source Affymetrix Proprietary Database