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[188508_at] chitinase

Description R09D1.2 /REP_DB=WormBase Gene ID /WP=CE03543 /TR=Q21858 /GB=CAA93862.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 76      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 95.9
(-1.1)
P 		43.4
(-3)
A 		79.3
(-1.7)
A 		206.2
(3)
P 		163
B 91.5
(-1)
P 		67.3
(-2.6)
A 		61.8
(-3)
A 		150.7
(3)
P 		89
C 95.9
(1)
P 		88.8
(0.6)
A 		15.8
(-3)
A 		137
(3)
P 		121
avr 94.4
(-0.8) 		66.5
(-2.2) 		52.3
(-3) 		164.6
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 67.1
(-3)
A 		82.8
(-2)
M 		94.2
(-1.2)
P 		98.8
(-0.9)
A 		86.1
(-1.7)
A 		157
(3)
P 		90
B 57
(-3)
P 		71.6
(-1.6)
A 		77.2
(-1.1)
P 		89.8
(0.1)
A 		111.9
(2.2)
A 		120.9
(3)
P 		64
C 47
(-3)
A 		58.7
(-1.5)
A 		74.1
(0.4)
A 		74.4
(0.5)
A 		62.3
(-1.1)
A 		94.3
(3)
P 		47
avr 57
(-3) 		71
(-1.7) 		81.8
(-0.8) 		87.7
(-0.3) 		86.8
(-0.3) 		124.1
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 34.9
(3)
P 		9.4
(-3)
A 		20.7
(-0.3)
A 		30.2
(1.9)
P 		26
B 29.2
(2)
P 		16.6
(-2.2)
A 		14.3
(-3)
A 		32.1
(3)
P 		18
C 31.7
(3)
P 		25.5
(1.6)
A 		5.5
(-3)
A 		23.1
(1)
P 		26
avr 31.9
(3) 		17.2
(-1.8) 		13.5
(-3) 		28.5
(1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 12.4
(-3)
A 		29.4
(1)
M 		20.5
(-1.1)
P 		25.1
(-0)
A 		26
(0.2)
A 		38.2
(3)
P 		26
B 19.8
(-2.8)
P 		23.8
(-1.9)
A 		18.7
(-3)
P 		23.8
(-1.9)
A 		45.5
(3)
A 		45.1
(2.9)
P 		27
C 17.4
(-2.1)
A 		17.9
(-2)
A 		18.9
(-1.6)
A 		15
(-3)
A 		20.2
(-1.1)
A 		31.6
(3)
P 		17
avr 16.5
(-3) 		23.7
(-1) 		19.4
(-2.2) 		21.3
(-1.7) 		30.6
(0.9) 		38.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3869
Sequence Type Exemplar sequence
Representative Public ID R09D1.2 NCBI
Target Description R09D1.2 /REP_DB=WormBase Gene ID /WP=CE03543 /TR=Q21858 /GB=CAA93862.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063619 NCBI Caenorhabditis elegans R09D1.2 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010204 ENSEMBL cdna:SNAP chromosome:CEL140:II:9438520:9443531:-1 9/11 None
GENEFINDER00000010213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9438520:9443531:-1 11/11 None
R09D1.2 ENSEMBL cdna:known chromosome:CEL140:II:9440350:9441847:-1 gene:R09D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9440346-9441844(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.2
Entrez Gene 187732 Entrez gene
SwissProt Q21858 EMBL-EBI
WormBase CE03543 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 0.0
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 0.0
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 0.0
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 1.0E-178
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.2E-117
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-9
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.7E-81
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.0E-109
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-97
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496020.1 1 27-49
R09D1.2 1 27-49
SNAP00000010204 1 31-53
GENEFINDER00000010213 2 31-53,417-439
Sequence
Target Sequence 
>C. ELEGANS:188508_AT
ttaccacccgctggagtagatacatgggaactcgggtacgatttggaagaaataatggaa
catgtagattttatgaatgtctattcaatggattactctgggccatgggataatcaatgg
ggtacacctactggaccatctgcaccgttggcattcaatattggacctaggaaaaatttc
aatgtggactggacgatgaagtattattcttgtaaaactcaacaacccggcaaattcaat
atggtaattccattttatgcaagatactggaacaatgtacaagaagccgttgatccaaga
actgaagtcttcagaaatgcagaaattcggaataacagagcagatggtgtcccgtacatg
gatcgaagttctgctgactataaaatggcgtcgtgggacaatttgacaagtactccgtac
atatggaaaccggatgaacgacgatttttcacttttgaaaaccaaaaaagtattgcaatc
aaaactcgatatgctattgatatgaatttgggaggtgtatggatttggtcagtggatatg
ggtgatcatggaaatgtcctcctgagtgcggttgcttctcaagaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCACCCGCTGGAGTAGATACAT 248 683 706 Antisense
GATACATGGGAACTCGGGTACGATT 707 421 724 Antisense
GGATTACTCTGGGCCATGGGATAAT 328 509 795 Antisense
CCATCTGCACCGTTGGCATTCAATA 584 271 841 Antisense
AACTCAACAACCCGGCAAATTCAAT 29 141 921 Antisense
GCAGATGGTGTCCCGTACATGGATC 559 311 1045 Antisense
CATGGATCGAAGTTCTGCTGACTAT 471 209 1062 Antisense
GACAATTTGACAAGTACTCCGTACA 550 363 1102 Antisense
GATGAACGACGATTTTTCACTTTTG 197 409 1138 Antisense
TGGAAATGTCCTCCTGAGTGCGGTT 388 547 1254 Antisense
GAGTGCGGTTGCTTCTCAAGAATTT 97 401 1269 Antisense
Sequence Source Affymetrix Proprietary Database