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[188507_s_at]

Description F54E7.7 /REP_DB=WormBase Gene ID /WP=CE01318 /GEN=rcn-1 /TR=SW:P53806 /GB=AAK20076.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 67      6grp_total > 38      4grp_total > 18      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2547
1 2 3 4 range
A 2125.1
(-3)
P 		3180.3
(1.6)
P 		2511.6
(-1.3)
P 		3508.1
(3)
P 		1383
B 1521.2
(-3)
P 		2205.9
(-1.4)
P 		1779.6
(-2.4)
P 		4068.1
(3)
P 		2547
C 1926.3
(-3)
P 		2940.6
(0.9)
P 		2065.4
(-2.5)
P 		3471.8
(3)
P 		1546
avr 1857.5
(-3) 		2775.6
(0) 		2118.9
(-2.1) 		3682.7
(3) 		1825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1155
1 2 3 4 5 6 range
A 2293.4
(2.4)
P 		1872.8
(0.1)
P 		1294.2
(-3)
P 		1610
(-1.3)
P 		1470.5
(-2)
P 		2403.4
(3)
P 		1109
B 2032.8
(2.6)
P 		1397.8
(-3)
P 		1465.8
(-2.4)
P 		1941.5
(1.8)
P 		1400.1
(-3)
P 		2080.3
(3)
P 		683
C 2371.2
(3)
P 		1786.4
(-0.1)
P 		1662.9
(-0.8)
P 		1248.4
(-3)
P 		1841.2
(0.2)
P 		1358.8
(-2.4)
P 		1123
avr 2232.5
(3) 		1685.7
(-1.3) 		1474.3
(-3) 		1600
(-2) 		1570.6
(-2.2) 		1947.5
(0.7) 		758
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 773.7
(3)
P 		690.4
(1.1)
P 		656.6
(0.3)
P 		513.5
(-3)
P 		260
B 485.1
(-2)
P 		544.8
(-1.3)
P 		412.4
(-3)
P 		866.9
(3)
P 		455
C 637.7
(-1.8)
P 		845.4
(3)
P 		719.9
(0.1)
P 		585.4
(-3)
P 		260
avr 632.2
(-0.8) 		693.5
(3) 		596.3
(-3) 		655.3
(0.6) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 422.8
(-0.8)
P 		666.1
(3)
P 		281.8
(-3)
P 		408.3
(-1)
P 		443.7
(-0.5)
P 		585.1
(1.7)
P 		384
B 707.3
(2)
P 		465.3
(-1.4)
P 		355.9
(-3)
P 		514.2
(-0.7)
P 		568.9
(0)
P 		775.7
(3)
P 		420
C 878.9
(3)
P 		545.1
(-0.2)
P 		423.2
(-1.4)
P 		251
(-3)
P 		595.8
(0.3)
P 		454.9
(-1.1)
P 		628
avr 669.7
(3) 		558.8
(0.9) 		353.6
(-3) 		391.2
(-2.3) 		536.1
(0.5) 		605.2
(1.8) 		316
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188507_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7743
Sequence Type Exemplar sequence
Representative Public ID F54E7.7 NCBI
Target Description F54E7.7 /REP_DB=WormBase Gene ID /WP=CE01318 /GEN=rcn-1 /TR=SW:P53806 /GB=AAK20076.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065822 NCBI Caenorhabditis elegans Regulator of CalciNeurin family member (rcn-1) (rcn-1) mRNA, complete cds. 11/11 None
SNAP00000020789 ENSEMBL cdna:SNAP chromosome:CEL140:III:5682587:5683978:-1 10/11 None
GENEFINDER00000020794 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5682587:5683978:-1 10/11 None
F54E7.7.1 ENSEMBL cdna:known chromosome:CEL140:III:5682295:5684047:-1 gene:F54E7.7 11/11 None
F54E7.7.2 ENSEMBL cdna:known chromosome:CEL140:III:5682587:5684049:-1 gene:F54E7.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5682421-5683977(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rcn-1
Ensembl F54E7.7
Entrez Gene 175788 Entrez gene
SwissProt P53806 EMBL-EBI
WormBase CE31002 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20750.1.S1_AT similar to calcipressin 1 isoform c cfa
CANINE_2:CFAAFFX.15026.1.S1_S_AT similar to calcipressin 1 isoform c cfa
HG-U133_PLUS_2:208370_S_AT Down syndrome critical region gene 1 hs
HG-U133A:208370_S_AT Down syndrome critical region gene 1 hs
HG-FOCUS:208370_S_AT Down syndrome critical region gene 1 hs
HG-U133A_2:208370_S_AT Down syndrome critical region gene 1 hs
HU35KSUBA:HUM_ALU_AT Down syndrome critical region gene 1 hs
HU35KSUBB:HUM_ALU_AT Down syndrome critical region gene 1 hs
HU35KSUBC:HUM_ALU_AT Down syndrome critical region gene 1 hs
HU35KSUBD:HUM_ALU_AT Down syndrome critical region gene 1 hs
HUGENEFL:HUM_ALU_AT Down syndrome critical region gene 1 hs
HC-G110:HUM_ALU_AT Down syndrome critical region gene 1 hs
HUGENEFL:U85265_AT Down syndrome critical region gene 1 hs
HUGENEFL:U85267_AT Down syndrome critical region gene 1 hs
HUGENEFL:U28833_AT Down syndrome critical region gene 1 hs
U133_X3P:G7657042_3P_A_AT Down syndrome critical region gene 1 hs
HG-U133A_2:215253_S_AT Down syndrome critical region gene 1 hs
HG-U133_PLUS_2:215253_S_AT Down syndrome critical region gene 1 hs
HG-U133A:215253_S_AT Down syndrome critical region gene 1 hs
HG-U95AV2:32168_S_AT Down syndrome critical region gene 1 hs
HG-U133_PLUS_2:215254_AT Down syndrome critical region gene 1 hs
HG-U133A_2:215254_AT Down syndrome critical region gene 1 hs
HG-U133A:215254_AT Down syndrome critical region gene 1 hs
HU35KSUBC:RC_T95064_AT Down syndrome critical region gene 1 hs
U133_X3P:HS2.332821.1.S1_3P_S_AT Down syndrome critical region gene 1 hs
U133_X3P:HS.250724.0.S1_3P_AT Down syndrome critical region gene 1 hs
HG-U133_PLUS_2:1558181_AT Down syndrome critical region gene 1 hs
HG-U95C:59869_AT Down syndrome critical region gene 1 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19722 calcium-mediated signaling inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK20076 Regulator of calcineurin protein 1 [Caenorhabditis elegans] ref|NP_498223.2| Regulator of CalciNeurin family member (rcn-1) [Caenorhabditis elegans] gb|AAF01683.1| Down Syndrome candidate region 1-like protein [Caenorhabditis elegans] sp|P53806|CCPL_CAEEL Calcipressin-like protein (Down Syndrome candidate region 1-like protein) 1.0E-108
blast CAE64315 Hypothetical protein CBG08993 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR006931 EMBL-EBI Calcipressin 1.8E-85
Sequence
Target Sequence 
>C. ELEGANS:188507_S_AT
acttctcatctctattcacacaaatcgagaaagacattcatttcgatttcctgcgcagct
tccgacgagttcgagtaattttcagctcccccgaaaacgctacagccgccaaacttatcg
ttcaaggattctcttttaaagggcacgagttgaaagctttttttgcacaaaggatctaca
tgagtgccaattcccaaatgctttcccccccaccactcgaaaaacagtttttaatttcac
caccatgttctccaccagtcggatgggagcagactaaagatatgccaccggttgtatgca
attttgatttaatggccagacttgcgtcatttgctatcgatgaaaaatatgaagtacaca
atggagacgagctgacaccagcaatcattgttcatccatgcgagaccccaattgacgtac
catcagcaattgaaatgccacgaactccacgcccttcatctccatctttacaatcatcct
cattctatttgtgttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTCATCTCTATTCACACAAAT 690 103 161 Antisense
CGCAGCTTCCGACGAGTTCGAGTAA 348 255 214 Antisense
GAGTTCGAGTAATTTTCAGCTCCCC 475 397 227 Antisense
GATCTACATGAGTGCCAATTCCCAA 581 419 333 Antisense
TTTTAATTTCACCACCATGTTCTCC 145 675 389 Antisense
TGTTCTCCACCAGTCGGATGGGAGC 150 563 406 Antisense
GATATGCCACCGGTTGTATGCAATT 539 425 439 Antisense
ATGGCCAGACTTGCGTCATTTGCTA 438 53 472 Antisense
GACACCAGCAATCATTGTTCATCCA 75 369 534 Antisense
ATCCATGCGAGACCCCAATTGACGT 322 39 554 Antisense
TCATCCTCATTCTATTTGTGTTGCA 1 623 634 Antisense
Sequence Source Affymetrix Proprietary Database