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[188504_at] esterase

Description W02B12.4 /REP_DB=WormBase Gene ID /WP=CE14410 /TR=Q23123 /GB=CAA91397.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_high1_10_10 > 63      4grp_highest_8_8 > 50      4grp_high_8_8 > 41      6grp_total > 62      4grp_total > 46      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 200.7
(3)
P 		166.1
(1.1)
P 		108.6
(-2.2)
P 		94
(-3)
P 		107
B 210.7
(3)
P 		117.9
(-2.9)
P 		116.6
(-3)
P 		116.7
(-3)
P 		94
C 179.3
(3)
P 		116.9
(-3)
P 		139.2
(-0.9)
P 		118.4
(-2.9)
P 		62
avr 196.9
(3) 		133.6
(-1.4) 		121.5
(-2.2) 		109.7
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 83.3
(-3)
A 		92.2
(-2.4)
P 		173.2
(3)
P 		101.8
(-1.8)
P 		103.3
(-1.7)
P 		92.6
(-2.4)
P 		90
B 97.2
(-2.4)
P 		99.1
(-2.2)
P 		156.8
(3)
P 		153.2
(2.7)
P 		90.6
(-3)
P 		99.2
(-2.2)
P 		66
C 69.4
(-3)
P 		97.1
(-1.5)
P 		177.2
(3)
P 		124.4
(0.1)
P 		74.3
(-2.7)
P 		82.2
(-2.3)
P 		108
avr 83.3
(-3) 		96.1
(-2.1) 		169.1
(3) 		126.5
(0) 		89.4
(-2.6) 		91.3
(-2.4) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 73.1
(3)
P 		36.1
(-0.7)
P 		28.4
(-1.5)
P 		13.8
(-3)
P 		59
B 67.2
(3)
P 		29.1
(-2.4)
P 		27
(-2.7)
P 		24.9
(-3)
P 		42
C 59.3
(3)
P 		33.6
(-0.9)
P 		48.5
(1.4)
P 		20
(-3)
P 		39
avr 66.5
(3) 		32.9
(-1.3) 		34.6
(-1.1) 		19.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 15.4
(-3)
A 		32.8
(1.7)
P 		37.7
(3)
P 		25.8
(-0.2)
P 		31.2
(1.3)
P 		22.5
(-1.1)
P 		22
B 33.8
(-2.4)
P 		33
(-3)
P 		38.1
(1)
P 		40.6
(3)
P 		36.8
(-0)
P 		37
(0.2)
P 		8
C 25.7
(-2.5)
P 		29.6
(-1.4)
P 		45.1
(3)
P 		25
(-2.7)
P 		24.1
(-3)
P 		27.5
(-2)
P 		21
avr 25
(-3) 		31.8
(-0.3) 		40.3
(3) 		30.5
(-0.8) 		30.7
(-0.8) 		29
(-1.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3881
Sequence Type Exemplar sequence
Representative Public ID W02B12.4 NCBI
Target Description W02B12.4 /REP_DB=WormBase Gene ID /WP=CE14410 /TR=Q23123 /GB=CAA91397.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064042(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064042 NCBI Caenorhabditis elegans W02B12.4 (esterase) mRNA, complete cds. 10/11 None
SNAP00000002909 ENSEMBL cdna:SNAP chromosome:CEL140:II:11455711:11459261:-1 10/11 None
GENEFINDER00000002932 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11455711:11459261:-1 10/11 None
W02B12.4 ENSEMBL cdna:known chromosome:CEL140:II:11455664:11459261:-1 gene:W02B12.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11455906-11459258(-) 91.32 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl W02B12.4
Entrez Gene 189110 Entrez gene
SwissProt Q23123 EMBL-EBI
WormBase CE37933 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91397 Hypothetical protein W02B12.4 [Caenorhabditis elegans] ref|NP_496443.2| W02B12.4 [Caenorhabditis elegans] 0.0
blast CAE59503 Hypothetical protein CBG02889 [Caenorhabditis briggsae] 0.0
blast AAA96175 Hypothetical protein K07C11.4 [Caenorhabditis elegans] ref|NP_505114.1| K07C11.4 [Caenorhabditis elegans] 3.0E-59
blast AAA96175 Hypothetical protein K07C11.4 [Caenorhabditis elegans] ref|NP_505114.1| K07C11.4 [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.1E-29
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.1E-83
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188504_AT
aatcatctcctgcaatatttccgtatatacaccgagataccgtcgaggagtacatcaact
caacaatagcaattcaatatggtatcggttctgaaagtgcttatgatatgaccagtgcat
attatctatcagctaacgcaactgataacgattatggatattttatgtggcaaaggtcaa
aggtctcggcacgacaaatgtttttgaagagtactgtaactttagttgctttggaatttc
caaaaaaaatcgactcaaacactggattcgatattcctattcttcgagaagctcgtgcaa
gatctcaagtatcgcctgatctttatctttaccattttccgtattttaatccagccgagt
ttgatgtagactttccagttcgggctacttatcactgtcatgaattcccatacatttggg
gagtctacaaggacaattatttcgaatttaacgacgatgatagaacagtctccgcatttt
taatcacatccttgacaaatttcataaagacgggaaatccttcaagctcggaatttaatt
ggcctttatacgactcatcagtttctcatacagttatcgggccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATCTCCTGCAATATTTCCGTA 343 171 1283 Antisense
GCAAAGGTCAAAGGTCTCGGCACGA 89 317 1452 Antisense
GAAGCTCGTGCAAGATCTCAAGTAT 289 343 1570 Antisense
GTATCGCCTGATCTTTATCTTTACC 105 455 1591 Antisense
TTTCCGTATTTTAATCCAGCCGAGT 253 669 1618 Antisense
GATGTAGACTTTCCAGTTCGGGCTA 219 409 1645 Antisense
TTCGGGCTACTTATCACTGTCATGA 13 695 1661 Antisense
GTCTCCGCATTTTTAATCACATCCT 142 471 1750 Antisense
GACGGGAAATCCTTCAAGCTCGGAA 462 377 1791 Antisense
ATTGGCCTTTATACGACTCATCAGT 347 3 1820 Antisense
GTTTCTCATACAGTTATCGGGCCAA 631 449 1843 Antisense
Sequence Source Affymetrix Proprietary Database