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[188503_s_at] helicase

Description B0041.7 /REP_DB=WormBase Gene ID /WP=CE17314 /GEN=xnp-1 /GB=AAC24256.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=helicase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 74      6grp_total > 50      4grp_total > 47      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 858.1
(3)
P 		439
(-2.2)
P 		607.5
(-0.1)
P 		376.8
(-3)
P 		481
B 768.4
(3)
P 		514.1
(-1.3)
P 		410
(-3)
P 		502.6
(-1.4)
P 		358
C 812.4
(3)
P 		567.2
(-0.9)
P 		431.4
(-3)
P 		466
(-2.5)
P 		381
avr 813
(3) 		506.8
(-2) 		483
(-2.4) 		448.5
(-3) 		365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 810.2
(2)
P 		831.2
(2.5)
P 		593.3
(-3)
P 		851.5
(3)
P 		677.4
(-1)
P 		708.9
(-0.3)
P 		258
B 931.6
(2)
P 		672.1
(-1.5)
P 		1008
(3)
P 		764.2
(-0.3)
P 		564.7
(-3)
P 		793.3
(0.1)
P 		443
C 866.2
(1.5)
P 		700.1
(-0.6)
P 		859.2
(1.5)
P 		978.3
(3)
P 		516.3
(-3)
P 		815.1
(0.9)
P 		462
avr 869.3
(3) 		734.5
(0.1) 		820.2
(2) 		864.7
(2.9) 		586.1
(-3) 		772.4
(0.9) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 312.4
(3)
P 		95.3
(-2.1)
P 		158.8
(-0.6)
P 		55.2
(-3)
P 		257
B 245.1
(3)
P 		127
(-1.7)
P 		95
(-3)
P 		107.1
(-2.5)
P 		150
C 268.9
(3)
P 		163.1
(-0.3)
P 		150.3
(-0.7)
P 		78.6
(-3)
P 		190
avr 275.5
(3) 		128.5
(-1.5) 		134.7
(-1.3) 		80.3
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 149.4
(-2.3)
P 		295.6
(3)
P 		129.2
(-3)
P 		216
(0.1)
P 		204.4
(-0.3)
P 		172.6
(-1.4)
P 		166
B 324.2
(3)
P 		223.7
(-2)
P 		244.8
(-0.9)
P 		202.4
(-3)
P 		229.4
(-1.7)
P 		295.8
(1.6)
P 		122
C 321
(3)
P 		213.6
(-1.2)
P 		218.7
(-1)
P 		196.7
(-1.8)
P 		167.1
(-3)
P 		272.9
(1.1)
P 		154
avr 264.9
(3) 		244.3
(1.2) 		197.6
(-3) 		205
(-2.3) 		200.3
(-2.8) 		247.1
(1.4) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188503_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2461
Sequence Type Exemplar sequence
Representative Public ID B0041.7 NCBI
Target Description B0041.7 /REP_DB=WormBase Gene ID /WP=CE17314 /GEN=xnp-1 /GB=AAC24256.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025787 NCBI Caenorhabditis elegans B0041.7 (helicase) mRNA, complete cds. 11/11 None
B0041.7 ENSEMBL cdna:known chromosome:CEL140:I:4665745:4671739:-1 gene:B0041.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4666146-4671715(-) 95.93 100.0
Public Domain and Genome References
Gene Title helicase
Gene Symbol xnp-1
Ensembl B0041.7
Entrez Gene 172077 Entrez gene
SwissProt Q9U7E0 EMBL-EBI
WormBase CE17314 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604443_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE:1588601_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFA.2632.1.S1_S_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFAAFFX.26390.1.S1_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFAAFFX.26393.1.S1_S_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFAAFFX.26395.1.S1_S_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFAAFFX.26396.1.S1_S_AT similar to transcriptional regulator ATRX isoform 1 cfa
CANINE_2:CFAAFFX.26397.1.S1_S_AT similar to transcriptional regulator ATRX isoform 1 cfa
DROSOPHILA_2:1630882_S_AT dm
DROSGENOME1:143015_AT dm
CHICKEN:GGA.9229.1.S1_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
CHICKEN:GGA.9229.2.S1_A_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
CHICKEN:GGA.9668.1.S1_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
CHICKEN:GGAAFFX.22384.1.S1_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
CHICKEN:GGAAFFX.22386.1.S1_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
CHICKEN:GGAAFFX.22386.2.S1_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) gga
HG-U133A:208861_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:208861_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A_2:208861_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-FOCUS:208861_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A:208860_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A_2:208860_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:208860_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95AV2:39148_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95AV2:818_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HC-G110:818_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:211022_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A:211022_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A_2:211022_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A:208859_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A_2:208859_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:208859_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HUGENEFL:U72935_CDS3_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HUGENEFL:U72936_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HUGENEFL:U09820_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HUGENEFL:L34363_S_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:G6960325_3P_A_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:G606832_3P_A_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:G12803396_3P_A_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:HS.96264.0.S1_3P_A_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95AV2:39146_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95AV2:39147_G_AT alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A_2:217701_X_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:217701_X_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133A:217701_X_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133_PLUS_2:236778_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U133B:236778_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95C:65215_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95D:72414_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HG-U95D:76209_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HU35KSUBA:AA504307_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
HU35KSUBD:RC_AA489228_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:HS.136956.0.A1_3P_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
U133_X3P:HS.270495.0.A1_3P_AT Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) hs
MOUSE430_2:1453734_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOE430B:1453734_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MG-U74CV2:133207_F_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOE430A:1420945_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430A_2:1420945_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430_2:1420945_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOE430A:1450051_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430A_2:1450051_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430_2:1450051_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOE430A:1420946_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430A_2:1420946_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430_2:1420946_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOE430A:1420947_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430A_2:1420947_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430_2:1420947_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) mm
MOUSE430_2:1456832_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOE430B:1456832_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MG-U74CV2:133052_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MG-U74CV2:133208_R_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MG-U74CV2:138792_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOE430B:1438750_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOUSE430_2:1438750_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOE430B:1441014_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOUSE430_2:1441014_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOUSE430_2:1441771_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MOE430B:1441771_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MU19KSUBB:TC34652_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MU19KSUBC:TC41186_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MU19KSUBC:TC41186_G_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
MU19KSUBC:TC41303_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA mm
RG-U34A:D64059_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAE230A:1393798_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAT230_2:1393798_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAE230A:1389989_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAT230_2:1389989_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAE230B:1393596_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAT230_2:1393596_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAE230B:1385006_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAT230_2:1385006_AT alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAE230B:1384742_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RAT230_2:1384742_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
RG-U34B:RC_AI059711_AT Alpha thalassemia/mental retardation syndrome X-linked homolog (human) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24256 Human xnp gene related protein 1 [Caenorhabditis elegans] ref|NP_001020958.1| B0041.7 [Caenorhabditis elegans] 0.0
blast AAD55361 XNP-1 [Caenorhabditis elegans] sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1) 0.0
blast CAE74536 Hypothetical protein CBG22293 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 9.6E-77
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 6.1E-17
Sequence
Target Sequence 
>C. ELEGANS:188503_S_AT
atttcatgtgctccacccaaagatcggcttctcgcagatgtcatccataagaatcaacat
gcagttgtggattatattgagcatgacacacttttcgctaatgtcgaagacgagaagctc
actgagcaagaaatgaaggatgcgtggacagactatgagaaggataaatctggaatgcct
gttcgtgctcaatatgcggcgccaccaatgccaggattcccgaatggaatgatcgttgga
cagaatgttcaagcattacttcagaaccgaatgaatcaaggaatccgtgttgatcaaatg
caacatgacatactgttcaaagagcttcagaaaatgcgaatcaaggatgcaggaactgca
gtcaaaattgtgctcctgagaaacttgctcgagcagattcttccgtatattccggatgag
atgcgtggtggaatgagcgagtttaacactcattttattcgtcttgttcatgaaactgat
cgaaaaatggagacgcctgctgatttgctgcgtaaatcgctggaatccttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCATGTGCTCCACCCAAAGATC 402 15 3472 Antisense
GGCTTCTCGCAGATGTCATCCATAA 516 537 3497 Antisense
GAGCATGACACACTTTTCGCTAATG 501 389 3550 Antisense
AAATCTGGAATGCCTGTTCGTGCTC 132 119 3637 Antisense
CCTGTTCGTGCTCAATATGCGGCGC 543 263 3649 Antisense
CCACCAATGCCAGGATTCCCGAATG 405 273 3673 Antisense
TGTGCTCCTGAGAAACTTGCTCGAG 264 557 3840 Antisense
TTGCTCGAGCAGATTCTTCCGTATA 495 703 3856 Antisense
ACACTCATTTTATTCGTCTTGTTCA 708 107 3917 Antisense
AGACGCCTGCTGATTTGCTGCGTAA 259 71 3962 Antisense
TGCGTAAATCGCTGGAATCCTTCAA 204 583 3980 Antisense
Sequence Source Affymetrix Proprietary Database