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[188501_at] Ras family

Description 4R79.2 /REP_DB=WormBase Gene ID /WP=CE19650 /TR=Q9XXA4 /GB=CAA20282.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ras family
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 10      6grp_total > 34      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 67
(-0.5)
P 		22
(-3)
P 		39.2
(-2.1)
A 		132
(3)
A 		110
B 73.9
(1.2)
P 		82.3
(3)
P 		54.4
(-3)
A 		67.2
(-0.2)
P 		28
C 63.3
(-1.6)
P 		36.2
(-3)
P 		38.3
(-2.9)
P 		151.3
(3)
M 		115
avr 68.1
(-1) 		46.8
(-2.8) 		44
(-3) 		116.8
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 105.8
(3)
P 		50.6
(-2.9)
A 		71.3
(-0.7)
P 		65.6
(-1.3)
P 		62.8
(-1.6)
P 		49.3
(-3)
P 		57
B 96
(2.3)
P 		40.4
(-2.3)
P 		104.1
(3)
P 		32.4
(-3)
A 		36.7
(-2.6)
P 		47.3
(-1.8)
P 		72
C 63.9
(-0.5)
P 		92.8
(3)
P 		51.5
(-2.1)
A 		51.5
(-2.1)
A 		43.8
(-3)
P 		61.8
(-0.8)
P 		49
avr 88.6
(3) 		61.3
(-1) 		75.6
(1.1) 		49.8
(-2.7) 		47.8
(-3) 		52.8
(-2.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.4
(3)
P 		4.8
(-3)
P 		10.3
(-1.3)
A 		19.3
(1.4)
A 		20
B 23.6
(3)
P 		20.3
(1.2)
P 		12.6
(-3)
A 		14.3
(-2.1)
P 		11
C 20.9
(1.2)
P 		10.4
(-3)
P 		13.3
(-1.8)
P 		25.5
(3)
M 		15
avr 23
(3) 		11.8
(-3) 		12.1
(-2.8) 		19.7
(1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 19.5
(3)
P 		18
(1.8)
A 		15.5
(-0.2)
P 		16.6
(0.7)
P 		19
(2.6)
P 		12
(-3)
P 		8
B 33.4
(3)
P 		13.5
(-1.8)
P 		25.3
(1)
P 		8.6
(-3)
A 		14.9
(-1.5)
P 		17.6
(-0.8)
P 		25
C 23.7
(1.5)
P 		28.3
(3)
P 		13.1
(-2.1)
A 		10.4
(-3)
A 		14.2
(-1.7)
P 		20.7
(0.5)
P 		18
avr 25.5
(3) 		19.9
(0.5) 		18
(-0.3) 		11.9
(-3) 		16
(-1.2) 		16.8
(-0.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8664
Sequence Type Exemplar sequence
Representative Public ID 4R79.2 NCBI
Target Description 4R79.2 /REP_DB=WormBase Gene ID /WP=CE19650 /TR=Q9XXA4 /GB=CAA20282.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ras family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070719 NCBI Caenorhabditis elegans 4R79.2 (4R79.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023045 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17480352:17483286:-1 11/11 None
4R79.2 ENSEMBL cdna:known chromosome:CEL140:IV:17480352:17483286:-1 gene:4R79.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023041 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17480357-17483292(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ras family
Ensembl 4R79.2
Entrez Gene 181797 Entrez gene
SwissProt Q9XXA4 EMBL-EBI
WormBase CE19650 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20282 Hypothetical protein 4R79.2 [Caenorhabditis elegans] ref|NP_503120.1| 4R79.2 [Caenorhabditis elegans] 0.0
blast CAE57466 Hypothetical protein CBG00431 [Caenorhabditis briggsae] 0.0
blast XP_790604 PREDICTED: similar to RAB13, member RAS oncogene family [Strongylocentrotus purpuratus] 8.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.4E-62
Sequence
Target Sequence 
>C. ELEGANS:188501_AT
ttttgttggtgattcggctgttggaaaaacttgttttctacatagattttgtcacaaccg
tttcaagcctttattcaacgctaccattggtgttgatttcactgtgaaaactatgaaaat
tccaccaaatagagcaattgcaatgcagttatgggatacagcagggcaagaaagattccg
ctcaatcacaaaacaatatttccggaaggcagatggagttgtgctaatgtttgatgtaac
gtcagaacagagttttctaaatgttagaaattggatagattccgtgagagctggagttga
cgatgcaactgtaatgtgcctggtcggaaataaaatggatctttttggaagtgacatagc
taggagtgccgtttatcgagctgctgaaaaattggctgtggaatttaaaataccgttttt
cgaaacaagtgcgtacactgggtttggaattgacacttgcatgcgtcagatggcagaaaa
ccttcagcggcgcgaagacaaccattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTTGGTGATTCGGCTGTTGGA 707 677 630 Antisense
TCACAACCGTTTCAAGCCTTTATTC 517 627 681 Antisense
AAGCCTTTATTCAACGCTACCATTG 666 147 694 Antisense
GCAGGGCAAGAAAGATTCCGCTCAA 700 309 790 Antisense
GTGAGAGCTGGAGTTGACGATGCAA 537 483 913 Antisense
GCAACTGTAATGTGCCTGGTCGGAA 526 319 934 Antisense
TAGGAGTGCCGTTTATCGAGCTGCT 127 653 990 Antisense
AGTGCGTACACTGGGTTTGGAATTG 563 59 1057 Antisense
GACACTTGCATGCGTCAGATGGCAG 605 365 1081 Antisense
AGATGGCAGAAAACCTTCAGCGGCG 687 65 1097 Antisense
TCAGCGGCGCGAAGACAACCATTTA 569 623 1113 Antisense
Sequence Source Affymetrix Proprietary Database