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[188499_at] 7TM chemoreceptor, str family

Description F21F8.10 /REP_DB=WormBase Gene ID /WP=CE09544 /GEN=str-135 /TR=O01536 /GB=AAC47998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 02      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 7.1
(-1.3)
A 		15.1
(2.3)
A 		3.2
(-3)
A 		16.6
(3)
A 		13
B 2.3
(-3)
A 		6.5
(-1.8)
A 		13.8
(0.4)
A 		22.6
(3)
A 		20
C 18.2
(-2.2)
A 		5.3
(-2.9)
A 		3.8
(-3)
A 		108.1
(3)
M 		104
avr 9.2
(-2.7) 		9
(-2.7) 		6.9
(-3) 		49.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 2.8
(-3)
A 		8.9
(-2.5)
A 		73.8
(3)
A 		6
(-2.7)
A 		15.8
(-1.9)
A 		2.8
(-3)
A 		71
B 6.5
(-2.6)
A 		16.8
(-1.1)
A 		5.3
(-2.8)
A 		27.6
(0.4)
A 		46.1
(3)
A 		3.6
(-3)
A 		43
C 31.4
(-0.1)
A 		58.2
(3)
A 		5.9
(-3)
A 		11.3
(-2.4)
A 		6.4
(-2.9)
A 		6.1
(-3)
A 		52
avr 13.6
(-0.7) 		28
(2.9) 		28.3
(3) 		15
(-0.3) 		22.8
(1.6) 		4.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.6
(1.3)
A 		3.3
(3)
A 		0.8
(-3)
A 		2.4
(0.8)
A 		3
B 0.7
(-3)
A 		1.6
(-1.7)
A 		3.2
(0.7)
A 		4.8
(3)
A 		4
C 6
(-1.3)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		18.2
(3)
M 		17
avr 3.1
(-1.8) 		2.1
(-2.7) 		1.8
(-3) 		8.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.2
(-2)
A 		16.1
(3)
A 		1.5
(-2.6)
A 		4.8
(-1.3)
A 		0.7
(-2.9)
A 		16
B 2.2
(-2.7)
A 		5.6
(-1.5)
A 		1.3
(-3)
A 		7.3
(-0.9)
A 		18.7
(3)
A 		1.3
(-3)
A 		17
C 11.6
(0.7)
A 		17.7
(3)
A 		1.5
(-3)
A 		2.3
(-2.7)
A 		2.1
(-2.8)
A 		2
(-2.8)
A 		16
avr 4.8
(-0.2) 		8.8
(3) 		6.3
(1) 		3.7
(-1.1) 		8.5
(2.8) 		1.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11759
Sequence Type Exemplar sequence
Representative Public ID F21F8.10 NCBI
Target Description F21F8.10 /REP_DB=WormBase Gene ID /WP=CE09544 /GEN=str-135 /TR=O01536 /GB=AAC47998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072737 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-135) (str-135) mRNA, complete cds. 11/11 None
GENEFINDER00000008568 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8281965:8283460:-1 11/11 None
F21F8.10 ENSEMBL cdna:known chromosome:CEL140:V:8281965:8283409:-1 gene:F21F8.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008551 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8281965-8283410(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-135
Ensembl F21F8.10
Entrez Gene 192008 Entrez gene
SwissProt O01536 EMBL-EBI
WormBase CE09544 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47998 Seven tm receptor protein 135 [Caenorhabditis elegans] ref|NP_505138.1| Seven TM Receptor family member (str-135) [Caenorhabditis elegans] 0.0
blast CAE66084 Hypothetical protein CBG11301 [Caenorhabditis briggsae] 1.0E-131
blast AAC47999 Seven tm receptor protein 136 [Caenorhabditis elegans] ref|NP_505137.1| Seven TM Receptor family member (str-136) [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505138.1 7 13-35,48-70,90-112,132-154,208-230,251-273,293-312
F21F8.10 7 13-35,48-70,90-112,132-154,208-230,251-273,293-312
GENEFINDER00000008568 7 29-51,64-86,106-128,149-171,225-247,268-290,310-329
Sequence
Target Sequence 
>C. ELEGANS:188499_AT
ttccttcaattttcgtattcgctgtgtggcatttcggttttttccatggaatgcctaaca
cattagaaaaacaaatatttcttcgagaagaattacaaacttgtttcaatgtaaatacca
cagtaaatccatttgttggacctatgtactggacaaaaggagctgatggacaaattcatt
ggaatatttttgaattaatatctgcattgagctgctttgctgtactgattatttgtttct
ttacgatcgtcttctgtgcgtatagcatatttatgaaaatgagcaactcaatacatcatt
tgagcgcaaaaactttagatctcaacaagcaattatttagaatgctctgtattcagacag
ttattccaatgatcacaatgtatttccctgtcgctttatttgtgacgcttccgatgtttg
ggaaagatattccttatttgggaaatatgacaagtagtagtctagccatttacccaatta
tcgagccaattattgcaatgacttgcgttgcaagtttcagaaaagctataaaaggatcaa
ttcgttgctcagttagtcgatcaactcaatttgcaattcaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCAATTTTCGTATTCGCTGT 248 699 431 Antisense
GTATTCGCTGTGTGGCATTTCGGTT 130 453 445 Antisense
GGCATTTCGGTTTTTTCCATGGAAT 406 537 458 Antisense
ATATCTGCATTGAGCTGCTTTGCTG 95 21 628 Antisense
GCTGCTTTGCTGTACTGATTATTTG 456 297 641 Antisense
TATTTGTTTCTTTACGATCGTCTTC 309 661 660 Antisense
CGATCGTCTTCTGTGCGTATAGCAT 506 249 674 Antisense
GTCGCTTTATTTGTGACGCTTCCGA 148 475 820 Antisense
GTCTAGCCATTTACCCAATTATCGA 528 469 890 Antisense
ATTCGTTGCTCAGTTAGTCGATCAA 678 9 970 Antisense
GATCAACTCAATTTGCAATTCACCC 259 421 989 Antisense
Sequence Source Affymetrix Proprietary Database