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[188497_at] esterase

Description K11G9.1 /REP_DB=WormBase Gene ID /WP=CE07374 /TR=Q23010 /GB=AAB04976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 67      4grp_total > 46      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 249.7
(3)
P 		141.4
(-0.2)
A 		82
(-2)
A 		49.6
(-3)
A 		200
B 263.7
(3)
P 		59.2
(-2.7)
A 		49.9
(-3)
A 		80
(-2.2)
A 		214
C 234.4
(3)
P 		109.5
(-2)
A 		89.4
(-2.8)
A 		84.1
(-3)
A 		150
avr 249.3
(3) 		103.4
(-1.9) 		73.8
(-2.9) 		71.2
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 164.2
(-0.3)
A 		123.9
(-2.7)
M 		118.3
(-3)
M 		162.4
(-0.4)
P 		152.3
(-1)
A 		220.9
(3)
P 		103
B 154.7
(-0.4)
P 		75.3
(-3)
A 		148.9
(-0.6)
M 		161.4
(-0.2)
P 		156.6
(-0.3)
P 		258.8
(3)
P 		184
C 135.5
(-0.8)
P 		121
(-1.5)
P 		177.6
(1.2)
M 		98.6
(-2.6)
A 		91
(-3)
P 		215.1
(3)
P 		124
avr 151.5
(-0.8) 		106.7
(-3) 		148.3
(-1) 		140.8
(-1.4) 		133.3
(-1.7) 		231.6
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 90.9
(3)
P 		30.7
(-1.3)
A 		21.4
(-2)
A 		7.3
(-3)
A 		84
B 84.1
(3)
P 		14.6
(-2.8)
A 		11.6
(-3)
A 		17.1
(-2.5)
A 		73
C 77.6
(3)
P 		31.5
(-1.4)
A 		31.2
(-1.4)
A 		14.2
(-3)
A 		63
avr 84.2
(3) 		25.6
(-1.9) 		21.4
(-2.3) 		12.9
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 30.3
(-2)
A 		44.1
(0.9)
M 		25.8
(-3)
M 		41.2
(0.3)
P 		46
(1.3)
A 		53.8
(3)
P 		28
B 53.8
(-0.6)
P 		25.1
(-3)
A 		36.2
(-2.1)
M 		42.7
(-1.5)
P 		63.6
(0.2)
P 		96.5
(3)
P 		71
C 50.2
(0.5)
P 		36.9
(-1)
P 		45.2
(-0.1)
M 		19.8
(-3)
A 		29.4
(-1.9)
P 		72
(3)
P 		52
avr 44.8
(-1.5) 		35.4
(-2.9) 		35.7
(-2.8) 		34.6
(-3) 		46.3
(-1.2) 		74.1
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11663
Sequence Type Exemplar sequence
Representative Public ID K11G9.1 NCBI
Target Description K11G9.1 /REP_DB=WormBase Gene ID /WP=CE07374 /TR=Q23010 /GB=AAB04976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072292 NCBI Caenorhabditis elegans K11G9.1 (esterase) mRNA, complete cds. 11/11 None
SNAP00000025344 ENSEMBL cdna:SNAP chromosome:CEL140:V:6679394:6681647:1 11/11 None
GENEFINDER00000025348 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6679394:6681647:1 11/11 None
K11G9.1 ENSEMBL cdna:known chromosome:CEL140:V:6679393:6681666:1 gene:K11G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6679394-6681648(+) 98.29 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl K11G9.1
Entrez Gene 179057 Entrez gene
SwissProt Q23010 EMBL-EBI
WormBase CE07374 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624700_A_AT dm
DROSGENOME1:150450_AT dm
MG-U74BV2:105977_F_AT carboxylesterase 2 mm
MOE430A:1424245_AT carboxylesterase 2 mm
MOUSE430A_2:1424245_AT carboxylesterase 2 mm
MOUSE430_2:1424245_AT carboxylesterase 2 mm
RT-U34:AB010635_S_AT carboxylesterase 2 (intestine, liver) rn
RG-U34A:AB010635_S_AT carboxylesterase 2 (intestine, liver) rn
RAE230A:1368905_AT carboxylesterase 2 (intestine, liver) rn
RAT230_2:1368905_AT carboxylesterase 2 (intestine, liver) rn
Protein Similarities
Method ID Description E-Value
blast AAB04976 Hypothetical protein K11G9.1 [Caenorhabditis elegans] ref|NP_504693.1| K11G9.1 [Caenorhabditis elegans] 0.0
blast CAE71929 Hypothetical protein CBG18992 [Caenorhabditis briggsae] 0.0
blast CAE71927 Hypothetical protein CBG18990 [Caenorhabditis briggsae] 1.0E-178
blast CAE71927 Hypothetical protein CBG18990 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188497_AT
gttggagactccattttccatacaggagttcgtgcaactgctcagaatgccgcagagcac
ggggacgaagtttggctctataatttcgattactgcaatccggatggattcgctccactc
aagggttatctgccatacatagaaccaacgcacggaatggagcttcggtatctgttcggt
gacggaataatcagcaagtttgagccaacggaagaagaactcaagatgcttgacaaattc
acaacaatgttcgctaactttgccaaatacggaaatccaaatgaaactggctccagtgca
tgggaaaagttcgatccggcccgtcctggaagacattatcgcatcagttatccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAGACTCCATTTTCCATACAG 216 435 1249 Antisense
TCGTGCAACTGCTCAGAATGCCGCA 324 605 1278 Antisense
GAATGCCGCAGAGCACGGGGACGAA 74 331 1293 Antisense
CACGGGGACGAAGTTTGGCTCTATA 708 197 1306 Antisense
GCAATCCGGATGGATTCGCTCCACT 492 317 1343 Antisense
TCGCTCCACTCAAGGGTTATCTGCC 27 601 1358 Antisense
TGGAGCTTCGGTATCTGTTCGGTGA 144 549 1406 Antisense
ATGTTCGCTAACTTTGCCAAATACG 48 47 1495 Antisense
CATGGGAAAAGTTCGATCCGGCCCG 243 207 1547 Antisense
CGGCCCGTCCTGGAAGACATTATCG 388 239 1565 Antisense
GACATTATCGCATCAGTTATCCAAA 299 371 1580 Antisense
Sequence Source Affymetrix Proprietary Database