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[188495_at] permease

Description F09G2.3 /REP_DB=WormBase Gene ID /WP=CE09298 /TR=O17404 /GB=AAB71321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=permease
Cluster 6grp_high1_10_10 > 92      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 94      4grp_total > 17      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 186.2
(-3)
P 		278.6
(-1.4)
P 		250.1
(-1.9)
P 		533
(3)
P 		347
B 155.4
(-3)
P 		293.2
(-0.9)
P 		208.9
(-2.2)
P 		550.4
(3)
P 		395
C 137.5
(-3)
P 		248
(-1.3)
P 		179.9
(-2.3)
P 		526.6
(3)
P 		389
avr 159.7
(-3) 		273.3
(-1.2) 		213
(-2.2) 		536.7
(3) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 197.7
(-2.1)
P 		101.4
(-2.9)
P 		88.9
(-3)
A 		501.1
(0.5)
P 		791
(3)
P 		520.4
(0.7)
P 		702
B 152.9
(-2.8)
P 		200.4
(-2.3)
P 		131.4
(-3)
P 		494.1
(0.6)
P 		736.7
(3)
P 		446.6
(0.1)
P 		605
C 114.6
(-3)
P 		155
(-2.6)
P 		150.2
(-2.7)
A 		519.3
(0.6)
P 		797.3
(3)
P 		503.8
(0.4)
P 		683
avr 155.1
(-2.7) 		152.3
(-2.7) 		123.5
(-3) 		504.8
(0.5) 		775
(3) 		490.3
(0.4) 		652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 67.8
(-0.5)
P 		60.5
(-3)
P 		65.4
(-1.3)
P 		78
(3)
P 		18
B 49.6
(-2.9)
P 		72.4
(-0.9)
P 		48.4
(-3)
P 		117.3
(3)
P 		69
C 45.5
(-3)
P 		71.3
(0.6)
P 		62.7
(-0.6)
P 		88.8
(3)
P 		43
avr 54.3
(-3) 		68.1
(-1) 		58.8
(-2.3) 		94.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 36.4
(-2.5)
P 		36.1
(-2.5)
P 		19.4
(-3)
A 		127.1
(-0.1)
P 		238.7
(3)
P 		126.7
(-0.1)
P 		219
B 53.2
(-2.5)
P 		66.7
(-2.2)
P 		31.9
(-3)
P 		130.9
(-0.8)
P 		299.3
(3)
P 		166.5
(0)
P 		267
C 42.5
(-2.9)
P 		47.3
(-2.8)
P 		38.2
(-3)
A 		104.4
(-1.2)
P 		258
(3)
P 		168.6
(0.6)
P 		220
avr 44
(-2.6) 		50
(-2.5) 		29.8
(-3) 		120.8
(-0.7) 		265.3
(3) 		153.9
(0.2) 		236
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12124
Sequence Type Exemplar sequence
Representative Public ID F09G2.3 NCBI
Target Description F09G2.3 /REP_DB=WormBase Gene ID /WP=CE09298 /TR=O17404 /GB=AAB71321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072422 NCBI Caenorhabditis elegans F09G2.3 (permease) mRNA, complete cds. 11/11 None
SNAP00000025945 ENSEMBL cdna:SNAP chromosome:CEL140:V:7187727:7190890:1 11/11 None
GENEFINDER00000025952 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7187727:7190890:1 11/11 None
F09G2.3 ENSEMBL cdna:known chromosome:CEL140:V:7187502:7191066:1 gene:F09G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7187727-7190891(+) 100.0 100.0
Public Domain and Genome References
Gene Title permease
Ensembl F09G2.3
Entrez Gene 179104 Entrez gene
SwissProt O17404 EMBL-EBI
WormBase CE32858 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18439_S_AT phosphate transporter family protein at
ATH1-121501:257311_AT phosphate transporter family protein at
CANINE_2:CFA.17453.1.S1_S_AT similar to solute carrier family 20, member 2 cfa
CANINE_2:CFA.18351.1.S1_AT similar to solute carrier family 20, member 2 cfa
CANINE_2:CFA.18351.1.S1_S_AT similar to solute carrier family 20, member 2 cfa
CANINE_2:CFAAFFX.9181.1.S1_S_AT similar to solute carrier family 20, member 2 cfa
DROSOPHILA_2:1626044_AT dm
DROSGENOME1:152917_AT dm
CHICKEN:GGA.3329.1.S1_AT solute carrier family 20 (phosphate transporter), member 2 gga
CHICKEN:GGAAFFX.23147.1.S1_AT solute carrier family 20 (phosphate transporter), member 2 gga
HG-U95AV2:1137_AT solute carrier family 20 (phosphate transporter), member 2 hs
HC-G110:1137_AT solute carrier family 20 (phosphate transporter), member 2 hs
HG-U133A:202744_AT solute carrier family 20 (phosphate transporter), member 2 hs
HG-U133_PLUS_2:202744_AT solute carrier family 20 (phosphate transporter), member 2 hs
HG-FOCUS:202744_AT solute carrier family 20 (phosphate transporter), member 2 hs
HG-U133A_2:202744_AT solute carrier family 20 (phosphate transporter), member 2 hs
HU35KSUBD:RC_T32846_AT solute carrier family 20 (phosphate transporter), member 2 hs
HUGENEFL:L20852_AT solute carrier family 20 (phosphate transporter), member 2 hs
U133_X3P:G5803172_3P_AT solute carrier family 20 (phosphate transporter), member 2 hs
HG-U95AV2:36956_AT solute carrier family 20 (phosphate transporter), member 2 hs
MG-U74BV2:114974_AT solute carrier family 20, member 2 mm
MOE430A:1451768_A_AT solute carrier family 20, member 2 mm
MOUSE430A_2:1451768_A_AT solute carrier family 20, member 2 mm
MOUSE430_2:1451768_A_AT solute carrier family 20, member 2 mm
MOE430A:1434235_AT solute carrier family 20, member 2 mm
MOUSE430A_2:1434235_AT solute carrier family 20, member 2 mm
MOUSE430_2:1434235_AT solute carrier family 20, member 2 mm
MG-U74BV2:104947_AT Type III sodium-dependent phosphate transporter (Slc20a2) mm
MOE430B:1457302_AT Type III sodium-dependent phosphate transporter (Slc20a2) mm
MOUSE430_2:1457302_AT Type III sodium-dependent phosphate transporter (Slc20a2) mm
MU19KSUBA:TC17170_AT Type III sodium-dependent phosphate transporter (Slc20a2) mm
MU19KSUBB:TC32080_AT Type III sodium-dependent phosphate transporter (Slc20a2) mm
RG-U34A:L19931_AT solute carrier family 20, member 2 rn
RG-U34B:RC_AA923955_AT solute carrier family 20, member 2 rn
RAE230A:1372747_AT solute carrier family 20, member 2 rn
RAT230_2:1372747_AT solute carrier family 20, member 2 rn
RAE230A:1369234_AT solute carrier family 20, member 2 rn
RAT230_2:1369234_AT solute carrier family 20, member 2 rn
YEAST_2:1769766_AT Na+/Pi cotransporter, active in early growth phase; similar to phosphate transporters of Neurospora crassa; transcription regulated by inorganic phosphate concentrations and Pho4p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5315 inorganic phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504823 F09G2.3 [Caenorhabditis elegans] gb|AAB71321.2| Hypothetical protein F09G2.3 [Caenorhabditis elegans] 0.0
blast CAE72016 Hypothetical protein CBG19098 [Caenorhabditis briggsae] 0.0
blast AAA92320 Hypothetical protein B0222.3 [Caenorhabditis elegans] ref|NP_505371.2| B0222.3 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504823.2 9 25-47,62-84,121-143,163-185,196-218,233-255,353-375,390-409,478-500
F09G2.3 9 25-47,62-84,121-143,163-185,196-218,233-255,353-375,390-409,478-500
SNAP00000025945 9 25-47,62-84,121-143,163-185,196-218,233-255,353-375,390-409,478-500
GENEFINDER00000025952 9 25-47,62-84,121-143,163-185,196-218,233-255,353-375,390-409,478-500
Sequence
Target Sequence 
>C. ELEGANS:188495_AT
gtgattctctacagacaccttcaccatcggaaccacaaggaaaaattcgaaaattcttca
aatggctcttcccggataagtcaagagttgaaagcgaggacacattgagaatgttcacat
cagtgcaggtcttgacagcttgtttcgcaggatttgctcacggagccaatgatgtttgta
atgcaattgctccgcttgttgctctcatcgctgtctaccgtgatttcgatgtttatcaga
aaaaggagactccgatcactgtcctactctatggagtttttgcaatttgcgtcggtttgt
ggtgtcttggacacaaggtaattcgaaccgttggtacgaacatgagcgaagtcaatccag
catcaggattttgtattgaattcggagccgctgtcacagctcttttggcttctaaaatgg
gacttcccatctctacaactcattgccttgtcggtgcagttgttgctgttggaagtgtga
aaggaggaaaagaaactgattggagccttttccgtaatgttgctttctcatgggttgtca
ctcttccagttgccggattattcgctgctctttacatgtggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTCTCTACAGACACCTTCACC 381 485 911 Antisense
TTCTTCAAATGGCTCTTCCCGGATA 147 689 964 Antisense
TGACAGCTTGTTTCGCAGGATTTGC 12 573 1043 Antisense
TCATCGCTGTCTACCGTGATTTCGA 321 621 1115 Antisense
GATCACTGTCCTACTCTATGGAGTT 573 419 1164 Antisense
CTGTCACAGCTCTTTTGGCTTCTAA 569 239 1301 Antisense
CATCTCTACAACTCATTGCCTTGTC 246 213 1338 Antisense
TTGCCTTGTCGGTGCAGTTGTTGCT 625 701 1353 Antisense
GCCTTTTCCGTAATGTTGCTTTCTC 32 281 1415 Antisense
TCCAGTTGCCGGATTATTCGCTGCT 633 589 1455 Antisense
ATTCGCTGCTCTTTACATGTGGCTT 368 9 1470 Antisense
Sequence Source Affymetrix Proprietary Database