[Home] | [Total List]

[188493_at] reductase

Description K07C5.2 /REP_DB=WormBase Gene ID /WP=CE06112 /TR=Q21274 /GB=CAA94895.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=reductase
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 13      6grp_total > 35      4grp_total > 02      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1287
1 2 3 4 range
A 900.1
(-2.1)
P 		778.7
(-2.7)
P 		717.3
(-3)
P 		2004.1
(3)
P 		1287
B 858.2
(-3)
P 		972
(-2.1)
P 		930
(-2.4)
P 		1596.3
(3)
P 		738
C 814.7
(-2.7)
P 		777
(-3)
P 		938.9
(-1.8)
P 		1602
(3)
P 		825
avr 857.7
(-2.9) 		842.6
(-3) 		862.1
(-2.9) 		1734.1
(3) 		892

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2567
1 2 3 4 5 6 range
A 4177.8
(3)
P 		3836.7
(2.1)
P 		4105.7
(2.8)
P 		2506.1
(-1.3)
P 		1820.1
(-3)
P 		2388.9
(-1.6)
P 		2358
B 3948.9
(2.8)
P 		4020.6
(3)
P 		2846.4
(-0.2)
P 		2227.3
(-1.8)
P 		1790.4
(-3)
P 		2452.5
(-1.2)
P 		2230
C 3170.7
(1.1)
P 		3894.9
(3)
P 		3048.8
(0.8)
P 		2572.5
(-0.5)
P 		1611.2
(-3)
P 		2192.2
(-1.5)
P 		2284
avr 3765.8
(2.6) 		3917.4
(3) 		3333.6
(1.4) 		2435.3
(-1.1) 		1740.6
(-3) 		2344.5
(-1.3) 		2177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 327.7
(3)
P 		169
(-3)
P 		187.5
(-2.3)
P 		293.4
(1.7)
P 		159
B 273.7
(-0.2)
P 		240.1
(-1.8)
P 		215.5
(-3)
P 		340.2
(3)
P 		125
C 269.7
(-0.3)
P 		223.4
(-3)
P 		327.2
(3)
P 		270.1
(-0.3)
P 		104
avr 290.4
(2.3) 		210.8
(-3) 		243.4
(-0.8) 		301.2
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 770.1
(-1.4)
P 		1364.5
(3)
P 		894.1
(-0.5)
P 		635.6
(-2.4)
P 		549.2
(-3)
P 		581.6
(-2.8)
P 		815
B 1374
(3)
P 		1338.3
(2.7)
P 		691.2
(-2.2)
P 		589.9
(-3)
P 		727.4
(-1.9)
P 		914.5
(-0.5)
P 		784
C 1175.2
(2.9)
P 		1188.4
(3)
P 		776
(-0.7)
P 		517.3
(-3)
P 		521.4
(-3)
P 		733.9
(-1.1)
P 		671
avr 1106.4
(1.4) 		1297.1
(3) 		787.1
(-1.3) 		580.9
(-3) 		599.3
(-2.8) 		743.3
(-1.6) 		716
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11270
Sequence Type Exemplar sequence
Representative Public ID K07C5.2 NCBI
Target Description K07C5.2 /REP_DB=WormBase Gene ID /WP=CE06112 /TR=Q21274 /GB=CAA94895.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073257 NCBI Caenorhabditis elegans K07C5.2 (reductase) mRNA, complete cds. 11/11 None
SNAP00000014061 ENSEMBL cdna:SNAP chromosome:CEL140:V:10342085:10343458:1 11/11 None
GENEFINDER00000014073 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10342085:10345194:1 11/11 None
K07C5.2 ENSEMBL cdna:known chromosome:CEL140:V:10342082:10343541:1 gene:K07C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10342084-10343458(+) 100.0 100.0
Public Domain and Genome References
Gene Title reductase
Ensembl K07C5.2
Entrez Gene 187089 Entrez gene
SwissProt Q21274 EMBL-EBI
WormBase CE06112 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94895 Hypothetical protein K07C5.2 [Caenorhabditis elegans] ref|NP_505658.1| K07C5.2 [Caenorhabditis elegans] 1.0E-173
blast CAA94895 Hypothetical protein K07C5.2 [Caenorhabditis elegans] ref|NP_505658.1| K07C5.2 [Caenorhabditis elegans] 1.0E-171
blast CAE64795 Hypothetical protein CBG09588 [Caenorhabditis briggsae] 1.0E-154
blast CAE64795 Hypothetical protein CBG09588 [Caenorhabditis briggsae] 1.0E-152
blast CAE64794 Hypothetical protein CBG09587 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 2.8E-106
Sequence
Target Sequence 
>C. ELEGANS:188493_AT
agccaattcccttgcaactttgcaaaccgattatgtagatcttcttttaattcactatcc
acgtgaccgtgatactggaaacgatgatgactacgaaattaacaaaagtagaaggaaaat
tgtttggcagacacttgaaaaggcaaaagagtctggaagagttcgttcaattggagtgtc
caactatgaagtttatcatctcgttgaaatgtttgagtatgcaaaaattcgtccagtcct
caatcaatacgaataccaaccgtacttgactcgtccaactcttaaaaagttctgtgatct
gaacaatatcgtcgttcaatcatattcttctctatgctggggagataaagaaattcttca
agagaaaccattggtcgatctttgtcaaaaatacaatcagactccgcaagcaattctcta
tgcttttgcacactgcagtaatacttctatgattccaaaatctgcaactccatcgagaat
tcacgataatttacacaataccataaaaatcaaattgaccgaggacgagctgaaatctct
cagatctctggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCAATTCCCTTGCAACTTTGCAA 52 85 318 Antisense
ATCTTCTTTTAATTCACTATCCACG 77 31 356 Antisense
GTATGCAAAAATTCGTCCAGTCCTC 387 453 534 Antisense
GTCCAGTCCTCAATCAATACGAATA 473 477 548 Antisense
GAATACCAACCGTACTTGACTCGTC 703 323 568 Antisense
GTACTTGACTCGTCCAACTCTTAAA 79 461 579 Antisense
ATCGTCGTTCAATCATATTCTTCTC 297 35 625 Antisense
GAAACCATTGGTCGATCTTTGTCAA 337 359 681 Antisense
ATCAGACTCCGCAAGCAATTCTCTA 575 27 713 Antisense
TTCTCTATGCTTTTGCACACTGCAG 478 691 731 Antisense
GCTGAAATCTCTCAGATCTCTGGAC 71 297 846 Antisense
Sequence Source Affymetrix Proprietary Database