[Home] | [Total List]

[188492_s_at] actin

Description Y71F9AL.16 /REP_DB=WormBase Gene ID /WP=CE25554 /TR=Q9N4I0 /GB=AAF36012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=actin
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 61      6grp_highest_sub > Cu      6grp_cgc > 01      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 487
1 2 3 4 range
A 811.7
(3)
P 		703.2
(1.6)
P 		563.2
(-0.1)
P 		332.2
(-3)
P 		480
B 604.3
(1.5)
P 		670.9
(3)
P 		641.4
(2.4)
P 		395.4
(-3)
P 		276
C 775.7
(3)
P 		738
(2.5)
P 		681.5
(1.7)
P 		324.6
(-3)
P 		451
avr 730.6
(3) 		704
(2.6) 		628.7
(1.4) 		350.7
(-3) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 741.7
(3)
P 		614.8
(-0.1)
P 		549.1
(-1.7)
P 		591.5
(-0.7)
P 		510.8
(-2.6)
P 		495.1
(-3)
P 		247
B 979.6
(3)
P 		631.4
(-0.4)
P 		367.9
(-3)
P 		527.5
(-1.4)
P 		780.9
(1.1)
P 		712.1
(0.4)
P 		612
C 1193.1
(3)
P 		565.2
(-1.9)
P 		489.5
(-2.5)
P 		418.7
(-3)
P 		579.4
(-1.8)
P 		456.4
(-2.7)
P 		774
avr 971.5
(3) 		603.8
(-1.4) 		468.8
(-3) 		512.6
(-2.5) 		623.7
(-1.2) 		554.5
(-2) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 295.5
(3)
P 		152.6
(-0.5)
P 		147.2
(-0.6)
P 		48.6
(-3)
P 		247
B 192.7
(3)
P 		165.7
(1.5)
P 		148.6
(0.6)
P 		84.3
(-3)
P 		108
C 256.8
(3)
P 		212.2
(1.7)
P 		237.5
(2.4)
P 		54.7
(-3)
P 		202
avr 248.3
(3) 		176.8
(0.7) 		177.8
(0.7) 		62.5
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 136.7
(-2)
P 		218.7
(3)
P 		119.6
(-3)
P 		150
(-1.2)
P 		154.1
(-0.9)
P 		120.5
(-2.9)
P 		99
B 340.9
(3)
P 		210.2
(-0.1)
P 		89.3
(-3)
P 		139.7
(-1.8)
P 		317.3
(2.4)
P 		265.5
(1.2)
P 		252
C 442.2
(3)
P 		172.5
(-1.5)
P 		124.6
(-2.3)
P 		84.2
(-3)
P 		187.5
(-1.3)
P 		152.8
(-1.9)
P 		358
avr 306.6
(3) 		200.5
(-0.3) 		111.2
(-3) 		124.6
(-2.6) 		219.6
(0.3) 		179.6
(-0.9) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188492_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.105
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.16 NCBI
Target Description Y71F9AL.16 /REP_DB=WormBase Gene ID /WP=CE25554 /TR=Q9N4I0 /GB=AAF36012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=actin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058665 NCBI Caenorhabditis elegans Y71F9AL.16 (actin) mRNA, complete cds. 11/11 None
SNAP00000005889 ENSEMBL cdna:SNAP chromosome:CEL140:I:2883865:2887337:-1 11/11 None
GENEFINDER00000005911 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2883865:2886549:-1 11/11 None
Y71F9AL.16 ENSEMBL cdna:known chromosome:CEL140:I:2883547:2893719:-1 gene:Y71F9AL.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005887 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2883864-2893714(-) 100.0 100.0
Public Domain and Genome References
Gene Title actin
Gene Symbol arx-1
Ensembl Y71F9AL.16
Entrez Gene 171857 Entrez gene
SwissProt Q9N4I0 EMBL-EBI
WormBase CE25554 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587690_AT ARP3 actin-related protein 3 homolog (yeast) cfa
CANINE:1582737_AT ARP3 actin-related protein 3 homolog (yeast) cfa
CANINE_2:CFA.3563.1.S1_AT ARP3 actin-related protein 3 homolog (yeast) cfa
CANINE_2:CFAAFFX.8395.1.S1_S_AT ARP3 actin-related protein 3 homolog (yeast) cfa
DROSOPHILA_2:1623716_AT Actin-related protein 66B dm
DROSGENOME1:154742_AT Actin-related protein 66B dm
CHICKEN:GGA.4076.1.S1_AT ARP3 actin-related protein 3 homolog (yeast) gga
CHICKEN:GGA.8984.1.S1_AT ARP3 actin-related protein 3 homolog (yeast) gga
HG-U133A:200996_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133_PLUS_2:200996_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133A_2:200996_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-FOCUS:200996_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133_PLUS_2:213101_S_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133A_2:213101_S_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133A:213101_S_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBA:AF006083_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBD:RC_AA199588_AT ARP3 actin-related protein 3 homolog (yeast) hs
U133_X3P:G7262289_3P_AT ARP3 actin-related protein 3 homolog (yeast) hs
U133_X3P:HS.10927.1.A1_3P_S_AT ARP3 actin-related protein 3 homolog (yeast) hs
U133_X3P:HS.10927.1.A1_3P_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133A_2:213102_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133_PLUS_2:213102_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133A:213102_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95AV2:35271_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBA:RC_AA165400_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBD:RC_R31917_S_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95C:64157_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133_PLUS_2:228603_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133B:228603_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133_PLUS_2:239170_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U133B:239170_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95B:47644_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95B:48172_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95B:54274_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95C:55138_R_AT ARP3 actin-related protein 3 homolog (yeast) hs
HG-U95E:69195_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBA:RC_AA382114_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBC:RC_N33149_AT ARP3 actin-related protein 3 homolog (yeast) hs
HU35KSUBD:RC_AA456112_AT ARP3 actin-related protein 3 homolog (yeast) hs
U133_X3P:HS.195789.0.A1_3P_AT ARP3 actin-related protein 3 homolog (yeast) hs
U133_X3P:HS.99410.0.A1_3P_AT ARP3 actin-related protein 3 homolog (yeast) hs
MOE430A:1452051_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430A_2:1452051_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430_2:1452051_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOE430A:1426392_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430A_2:1426392_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430_2:1426392_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBA:AA516781_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBA:AA122805_S_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBB:MSA.34708.0_S_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBB:MSA.11706.0_F_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBB:MSA.22205.0_S_AT ARP3 actin-related protein 3 homolog (yeast) mm
MU11KSUBB:MSA.11706.0_I_AT ARP3 actin-related protein 3 homolog (yeast) mm
MG-U74AV2:97904_AT ARP3 actin-related protein 3 homolog (yeast) mm
MG-U74CV2:169987_I_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOE430A:1434968_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430A_2:1434968_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOUSE430_2:1434968_A_AT ARP3 actin-related protein 3 homolog (yeast) mm
MOE430B:1459266_AT ARP3 actin-related protein 3 homolog (yeast) (Actr3), mRNA mm
MOUSE430_2:1459266_AT ARP3 actin-related protein 3 homolog (yeast) (Actr3), mRNA mm
MU19KSUBA:TC23825_S_AT ARP3 actin-related protein 3 homolog (yeast) (Actr3), mRNA mm
RG-U34C:RC_AI230743_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAE230A:1388128_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAT230_2:1388128_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAE230A:1370890_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAT230_2:1370890_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAE230B:1395886_AT ARP3 actin-related protein 3 homolog (yeast) rn
RAT230_2:1395886_AT ARP3 actin-related protein 3 homolog (yeast) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
15629 actin cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5200 structural constituent of cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36012 Arp2/3 complex component protein 1 [Caenorhabditis elegans] ref|NP_491066.1| Y71F9AL.16 [Caenorhabditis elegans] sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3) 0.0
blast Q61WW9 Actin-like protein 3 (Actin-related protein 3) emb|CAE60588.1| Hypothetical protein CBG04224 [Caenorhabditis briggsae] 0.0
blast AAF50488 CG7558-PA [Drosophila melanogaster] ref|NP_523968.1| CG7558-PA [Drosophila melanogaster] gb|AAK93283.1| LD35711p [Drosophila melanogaster] sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein 66B) (Actin-2) 0.0
blast AAF36012 Arp2/3 complex component protein 1 [Caenorhabditis elegans] ref|NP_491066.1| Y71F9AL.16 [Caenorhabditis elegans] sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3) 1.0E-147
blast Q61WW9 Actin-like protein 3 (Actin-related protein 3) emb|CAE60588.1| Hypothetical protein CBG04224 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR004000 EMBL-EBI Actin/actin-like 3.6E-101
Pfam IPR004000 EMBL-EBI Actin/actin-like 4.3E-53
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.5E-53
Sequence
Target Sequence 
>C. ELEGANS:188492_S_AT
gatcgtgagcacacaattccagccgagcagagctatgaggtggcgaagatgattaaggaa
aagttctgctacgtgtgcccggatgttatgaaggaatttgtaaagtatgatacggacgcg
gcaaagtggcttcgaacctacgatggaattaattcgattacaaaaaaaccgtttaacgtc
gacgttggatacgagagattcttgggtcctgaaatctttttccatccagaattctgtaat
ccagaattcacgacaccaatctctgatacaattgacacacttattcaacagtgtccaatt
gatgttcgtcgtggactctacgagaatattgtgctctctggaggatctacaatgttcaag
gactttgcacggaagcttcagcgtgacgtgaagcgtctcagtgatgggagacttcagatg
agcgagacgctgagtggtggacggttgaagccgaagccgattgatgttcaagtgatttcg
cataaaatgcagagatatgcggtttggtttggaggatctatgctggcgtccacttcggaa
ttctaccaagtttcacacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTGAGCACACAATTCCAGCCG 387 417 661 Antisense
TGCTACGTGTGCCCGGATGTTATGA 425 579 727 Antisense
TACGGACGCGGCAAAGTGGCTTCGA 170 647 771 Antisense
GGTCCTGAAATCTTTTTCCATCCAG 141 503 865 Antisense
GAATTCACGACACCAATCTCTGATA 567 323 904 Antisense
CAGTGTCCAATTGATGTTCGTCGTG 121 209 949 Antisense
TATTGTGCTCTCTGGAGGATCTACA 29 663 987 Antisense
GGACTTTGCACGGAAGCTTCAGCGT 9 525 1020 Antisense
GAGCGAGACGCTGAGTGGTGGACGG 83 387 1080 Antisense
GGTTTGGAGGATCTATGCTGGCGTC 525 505 1166 Antisense
GGAATTCTACCAAGTTTCACACACA 515 533 1197 Antisense
Sequence Source Affymetrix Proprietary Database