[Home] | [Total List]

[188487_s_at]

Description T08G5.10 /REP_DB=WormBase Gene ID /WP=CE25109 /GEN=mtl-2 /TR=SW:P17512 /GB=CAB61028.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 45      6grp_total > 09      4grp_total > 52      6grp_cgc > 50      6grp_high1_sub > 04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2345
1 2 3 4 range
A 2756.6
(2.6)
P 		2904.3
(3)
P 		2816.8
(2.7)
P 		896
(-3)
P 		2008
B 3240.8
(3)
P 		2925.7
(2.1)
P 		3058.2
(2.5)
P 		1191.1
(-3)
P 		2050
C 3003.9
(2.6)
P 		3142.1
(3)
P 		2370.6
(0.9)
P 		928
(-3)
P 		2214
avr 3000.4
(3) 		2990.7
(3) 		2748.5
(2.2) 		1005
(-3) 		1995

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2449
1 2 3 4 5 6 range
A 2727.5
(1.8)
P 		1759.1
(-0.5)
P 		2317.4
(0.8)
P 		3205.4
(3)
P 		2214.4
(0.6)
P 		756.7
(-3)
P 		2449
B 2704.3
(1.9)
P 		1988.2
(-0)
P 		1912.1
(-0.2)
P 		3105.1
(3)
P 		2673.6
(1.8)
P 		872.3
(-3)
P 		2233
C 2380
(1.2)
P 		1962.9
(0.1)
P 		2079.2
(0.4)
P 		3072.2
(3)
P 		2173.8
(0.6)
P 		793.6
(-3)
P 		2279
avr 2603.9
(1.6) 		1903.4
(-0.2) 		2102.9
(0.4) 		3127.6
(3) 		2353.9
(1) 		807.5
(-3) 		2320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 902
1 2 3 4 range
A 1003.7
(3)
P 		630.4
(0.4)
P 		736.4
(1.2)
P 		131.2
(-3)
P 		873
B 1033.5
(3)
P 		722.6
(0.6)
P 		708.7
(0.5)
P 		253.8
(-3)
P 		780
C 994.4
(3)
P 		903.4
(2.3)
P 		826.2
(1.8)
P 		156.5
(-3)
P 		838
avr 1010.5
(3) 		752.1
(1.1) 		757.1
(1.2) 		180.5
(-3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 902
1 2 3 4 5 6 range
A 502.8
(0)
P 		625.6
(1.2)
P 		504.7
(0.1)
P 		813
(3)
P 		668.2
(1.6)
P 		184.2
(-3)
P 		629
B 941
(1.9)
P 		661.8
(-0.3)
P 		464.3
(-1.9)
P 		822.4
(0.9)
P 		1086.3
(3)
P 		325.3
(-3)
P 		761
C 882.2
(3)
P 		599
(0.2)
P 		529.2
(-0.4)
P 		617.8
(0.4)
P 		703.4
(1.3)
P 		265.7
(-3)
P 		617
avr 775.3
(2.5) 		628.8
(1) 		499.4
(-0.4) 		751.1
(2.3) 		819.3
(3) 		258.4
(-3) 		561
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188487_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12971
Sequence Type Exemplar sequence
Representative Public ID T08G5.10 NCBI
Target Description T08G5.10 /REP_DB=WormBase Gene ID /WP=CE25109 /GEN=mtl-2 /TR=SW:P17512 /GB=CAB61028.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074081(11), M32386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074081 NCBI Caenorhabditis elegans MeTaLlothionein family member (mtl-2) (mtl-2) mRNA, complete cds. 11/11 None
M32386 NCBI C.elegans metallothionein-like protein (MT-Ce) mRNA, clone MTCe-1, complete cds. 11/11 None
SNAP00000009105 ENSEMBL cdna:SNAP chromosome:CEL140:V:14020959:14021207:-1 11/11 None
GENEFINDER00000009136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14020913:14021134:-1 11/11 None
T08G5.10 ENSEMBL cdna:known chromosome:CEL140:V:14020860:14021212:-1 gene:T08G5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14020958-14021207(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mtl-2
Ensembl T08G5.10
Entrez Gene 179899 Entrez gene
SwissProt P17512 EMBL-EBI
WormBase CE25109 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61028 Hypothetical protein T08G5.10 [Caenorhabditis elegans] ref|NP_506482.1| MeTaLlothionein family member (mtl-2) [Caenorhabditis elegans] sp|P17512|MT2_CAEEL Metallothionein-II (MT-II) (Metallothionein-like protein) (MT-Ce) emb|CAA37335.1| metallothionein-II [Caenorhabditis elegans] dbj|BAA04181.1| metallothionein-II [Caenorhabditis elegans] gb|AAA28118.1| metallothionein-like protein gb|AAA28117.1| metallothionein-like protein gb|AAA28111.1| metallothionein-2 1.0E-18
blast T24715 hypothetical protein T08G5.10 - Caenorhabditis elegans 1.0E-18
blast CAE61035 Hypothetical protein CBG04778 [Caenorhabditis briggsae] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:188487_S_AT
aattgttcctgcaacaccggaactaaagattgcgattgctccgacgccaagtgctgtgag
caatactgctgcccaactgccagtgagaagaaatgctgcaaatctggatgtgccggagga
tgcaagtgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTCCTGCAACACCGGAACTA 693 177 43 Antisense
ACACCGGAACTAAAGATTGCGATTG 198 109 56 Antisense
TAAAGATTGCGATTGCTCCGACGCC 465 641 66 Antisense
TGCTCCGACGCCAAGTGCTGTGAGC 533 581 79 Antisense
TCCGACGCCAAGTGCTGTGAGCAAT 349 593 82 Antisense
GTGCTGTGAGCAATACTGCTGCCCA 332 479 93 Antisense
CTGTGAGCAATACTGCTGCCCAACT 140 239 96 Antisense
CTGCTGCCCAACTGCCAGTGAGAAG 457 237 108 Antisense
ACTGCCAGTGAGAAGAAATGCTGCA 354 97 118 Antisense
GCTGCAAATCTGGATGTGCCGGAGG 78 297 137 Antisense
ATGTGCCGGAGGATGCAAGTGTGCC 485 49 150 Antisense
Sequence Source Affymetrix Proprietary Database