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[188486_s_at]

Description K10B4.6 /REP_DB=WormBase Gene ID /WP=CE12072 /GEN=cwn-1 /TR=SW:P34888 /GB=AAB71011.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 24      4grp_high_8_8 > 44      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 745.3
(0.5)
P 		979.6
(3)
P 		624.3
(-0.9)
P 		426.2
(-3)
P 		553
B 773.9
(1.1)
P 		905.3
(3)
P 		894.3
(2.8)
P 		487.7
(-3)
P 		418
C 841.3
(2)
P 		920.7
(3)
P 		691.3
(-0)
P 		466.3
(-3)
P 		454
avr 786.8
(1.1) 		935.2
(3) 		736.6
(0.5) 		460.1
(-3) 		475

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 798.2
(3)
P 		729.3
(2)
P 		731.9
(2)
P 		619.8
(0.4)
P 		410
(-2.6)
P 		385.6
(-3)
P 		413
B 842.4
(3)
P 		796.9
(2.4)
P 		820.7
(2.7)
P 		619.5
(0.2)
P 		364.9
(-3)
P 		441.8
(-2)
P 		478
C 683.9
(3)
P 		677.1
(2.9)
P 		595.4
(1.3)
P 		639.4
(2.1)
P 		380.3
(-3)
P 		455.3
(-1.5)
P 		304
avr 774.8
(3) 		734.4
(2.4) 		716
(2.1) 		626.2
(0.7) 		385.1
(-3) 		427.6
(-2.3) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 271.4
(3)
P 		212.6
(1.3)
P 		163.2
(-0.1)
P 		62.4
(-3)
P 		209
B 246.8
(3)
P 		223.6
(2)
P 		207.2
(1.3)
P 		103.9
(-3)
P 		143
C 278.5
(3)
P 		264.7
(2.6)
P 		240.9
(1.9)
P 		78.6
(-3)
P 		200
avr 265.6
(3) 		233.6
(2) 		203.8
(1) 		81.6
(-3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 147.1
(-1.1)
P 		259.4
(3)
P 		159.4
(-0.6)
P 		157.2
(-0.7)
P 		123.7
(-1.9)
P 		93.9
(-3)
P 		166
B 293.1
(3)
P 		265.2
(1.8)
P 		199.3
(-0.9)
P 		164.1
(-2.3)
P 		148.3
(-3)
P 		164.7
(-2.3)
P 		145
C 253.5
(3)
P 		206.6
(0.8)
P 		151.5
(-1.7)
P 		128.6
(-2.7)
P 		123.1
(-3)
P 		152.4
(-1.7)
P 		130
avr 231.2
(2.3) 		243.7
(3) 		170.1
(-0.9) 		150
(-2) 		131.7
(-3) 		137
(-2.7) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188486_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4771
Sequence Type Exemplar sequence
Representative Public ID K10B4.6 NCBI
Target Description K10B4.6 /REP_DB=WormBase Gene ID /WP=CE12072 /GEN=cwn-1 /TR=SW:P34888 /GB=AAB71011.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061267(11), NM_001027076(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061267 NCBI Caenorhabditis elegans C. elegans WNT family member (cwn-1) (cwn-1) mRNA, complete cds. 11/11 None
NM_001027076 NCBI Caenorhabditis elegans C. elegans WNT family member (cwn-1) (cwn-1) mRNA, complete cds. 10/11 None
SNAP00000039350 ENSEMBL cdna:SNAP chromosome:CEL140:II:131165:133421:-1 11/11 None
GENEFINDER00000039356 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:126938:133577:-1 11/11 None
K10B4.6a ENSEMBL cdna:known chromosome:CEL140:II:130983:133592:-1 gene:K10B4.6 11/11 None
K10B4.6b ENSEMBL cdna:known chromosome:CEL140:II:131051:133590:-1 gene:K10B4.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:131164-133577(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10B4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493668 C. elegans WNT family member (cwn-1) [Caenorhabditis elegans] gb|AAB71011.1| C. elegans wnt family protein 1, isoform a [Caenorhabditis elegans] sp|P34888|WNT1_CAEEL Wnt-1 protein precursor emb|CAA51446.1| Wnt-1 protein [Caenorhabditis elegans] 0.0
blast CAE62803 Hypothetical protein CBG06978 [Caenorhabditis briggsae] 0.0
blast T43627 hypothetical protein Wnt-1 - Caenorhabditis elegans (fragment) emb|CAA51447.1| Wnt-1 [Caenorhabditis elegans] 0.0
blast NP_001022247 C. elegans WNT family member (cwn-1) [Caenorhabditis elegans] gb|AAO38623.1| C. elegans wnt family protein 1, isoform b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005817 EMBL-EBI Wnt superfamily 1.0E-126
Pfam IPR005817 EMBL-EBI Wnt superfamily 1.0E-126
Pfam IPR005817 EMBL-EBI Wnt superfamily 1.0E-126
Pfam IPR005817 EMBL-EBI Wnt superfamily 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493668.1 1 7-29
NP_001022247.1 1 7-29
K10B4.6a 1 7-29
K10B4.6b 1 7-29
GENEFINDER00000039356 7 7-29,414-436,448-467,495-517,530-552,594-616,651-673
Sequence
Target Sequence 
>C. ELEGANS:188486_S_AT
gaacaagtcttctgggacctagccagctgtctgccgatggaatgcatatgattaatttgc
ataataatcaagctggaagacaggtcctcgaaaagtctcttcgtcgagaatgcaagtgtc
atggaatgagtggatcttgtgaaatgaggacttgttgggattcattaccaaacttcaggc
atatcggaatggcaatcaaggataagttcgatggagctgccgaggttaaagtcgtcaaag
aggatggtattgagaaacctcgaatcgtgatgaaaaattctcagttcaagcgacacacta
acgcggatctggtctacatgactccatcccccgacttttgtgaatctgacccactacgtg
gcatactcggaaccaaaggtcgtcagtgcactcttgcaccgaatgcgattgatgactgca
gtttgctctgttgtggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAGTCTTCTGGGACCTAGCCA 361 353 575 Antisense
CCAGCTGTCTGCCGATGGAATGCAT 316 273 597 Antisense
GGTCCTCGAAAAGTCTCTTCGTCGA 670 501 657 Antisense
AAAATTCTCAGTTCAAGCGACACAC 516 133 848 Antisense
GCGACACACTAACGCGGATCTGGTC 645 287 864 Antisense
ACGCGGATCTGGTCTACATGACTCC 255 91 875 Antisense
GACTTTTGTGAATCTGACCCACTAC 31 373 907 Antisense
ACCCACTACGTGGCATACTCGGAAC 505 89 923 Antisense
CCAAAGGTCGTCAGTGCACTCTTGC 394 275 947 Antisense
GCACTCTTGCACCGAATGCGATTGA 428 315 962 Antisense
GACTGCAGTTTGCTCTGTTGTGGTC 445 375 988 Antisense
Sequence Source Affymetrix Proprietary Database