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[188482_s_at]

Description F01F1.8 /REP_DB=WormBase Gene ID /WP=CE01234 /GEN=cct-6 /TR=SW:P46550 /GB=AAC46642.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 02      6grp_total > 16      4grp_total > 24      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1974
1 2 3 4 range
A 2882.7
(-3)
P 		3107
(-2)
P 		4016.3
(2)
P 		4255.7
(3)
P 		1373
B 2728.4
(-3)
P 		3252.9
(-0.8)
P 		3145.6
(-1.2)
P 		4157.9
(3)
P 		1430
C 2281.3
(-3)
P 		3435.4
(1.9)
P 		3459.2
(2)
P 		3686.3
(3)
P 		1405
avr 2630.8
(-3) 		3265.1
(-0.3) 		3540.4
(0.9) 		4033.3
(3) 		1403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1647
1 2 3 4 5 6 range
A 3019
(3)
P 		2682.8
(1.2)
P 		1889.9
(-2.9)
P 		1964.2
(-2.5)
P 		1870
(-3)
P 		2261.5
(-1)
P 		1149
B 3226.7
(3)
P 		2755.2
(1.3)
P 		1579.4
(-3)
P 		1799.3
(-2.2)
P 		1834.9
(-2.1)
P 		1901.9
(-1.8)
P 		1647
C 3000.9
(3)
P 		2496.7
(0.4)
P 		2361.1
(-0.3)
P 		1822.2
(-3)
P 		2099.2
(-1.6)
P 		1846.7
(-2.9)
P 		1179
avr 3082.2
(3) 		2644.9
(0.8) 		1943.5
(-2.6) 		1861.9
(-3) 		1934.7
(-2.6) 		2003.4
(-2.3) 		1220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 584
1 2 3 4 range
A 1049.6
(3)
P 		674.5
(-2.3)
P 		1049.9
(3)
P 		623
(-3)
P 		427
B 870.1
(2.4)
P 		803.4
(-0.2)
P 		728.9
(-3)
P 		886.1
(3)
P 		157
C 755.2
(-1.6)
P 		987.7
(0.8)
P 		1205.6
(3)
P 		621.6
(-3)
P 		584
avr 891.6
(0.8) 		821.9
(-0.6) 		994.8
(3) 		710.2
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 556.5
(-1.4)
P 		954.1
(3)
P 		411.6
(-3)
P 		498.2
(-2)
P 		564.3
(-1.3)
P 		550.6
(-1.5)
P 		543
B 1122.7
(3)
P 		917.1
(1.3)
P 		383.5
(-3)
P 		476.6
(-2.2)
P 		745.5
(-0.1)
P 		709.2
(-0.4)
P 		739
C 1112.3
(3)
P 		761.8
(0.2)
P 		600.9
(-1.1)
P 		366.4
(-3)
P 		679.3
(-0.5)
P 		618.2
(-1)
P 		746
avr 930.5
(3) 		877.7
(2.3) 		465.3
(-2.8) 		447.1
(-3) 		663
(-0.3) 		626
(-0.8) 		483
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188482_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7496
Sequence Type Exemplar sequence
Representative Public ID F01F1.8 NCBI
Target Description F01F1.8 /REP_DB=WormBase Gene ID /WP=CE01234 /GEN=cct-6 /TR=SW:P46550 /GB=AAC46642.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171135(11), NM_171136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171135 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-6) (cct-6) mRNA, complete cds. 11/11 None
NM_171136 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-6) (cct-6) mRNA, complete cds. 11/11 None
SNAP00000009918 ENSEMBL cdna:SNAP chromosome:CEL140:III:5853767:5855632:-1 11/11 None
GENEFINDER00000009933 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5853767:5856767:-1 11/11 None
F01F1.8a ENSEMBL cdna:known chromosome:CEL140:III:5853496:5855632:-1 gene:F01F1.8 11/11 A 
F01F1.8b.1 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855637:-1 gene:F01F1.8 11/11 None
F01F1.8b.3 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855633:-1 gene:F01F1.8 11/11 None
F01F1.8b.2 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855643:-1 gene:F01F1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5853765-5855631(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01F1.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46642 Chaperonin containing tcp-1 protein 6, isoform a [Caenorhabditis elegans] ref|NP_741153.1| Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] sp|P46550|TCPZ_CAEEL T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta) 0.0
blast CAE64385 Hypothetical protein CBG09073 [Caenorhabditis briggsae] 0.0
blast AAM22058 Chaperonin containing tcp-1 protein 6, isoform b [Caenorhabditis elegans] ref|NP_741154.1| Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 7.6E-119
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188482_S_AT
ctcgtttacgagcattcccttggagaagagaaatacacgtttatcgaggaatgccgtgct
ccaaaatctgtgactcttcttatcaagggaccaaacaagcataccatcactcaaatcaag
gatgctattcatgatggacttcgtgctgttttcaacaccatcgttgacaaggctgttctc
cctggagctgctgctttcgaaattgctgcctacgtgatgttgaaaaaagatgttgagaac
ctgaagggacgtgccaagctcggagctgaagcgtttgctcaagctcttctcgttattcca
aagacactggccgtaaatggaggatatgatgctcaggaaacacttgttaagcttattgag
gagaaaaccgccgctggaccagatatcgccgttggactcgatctcgaaaccggaggagct
gtcgagccacaaggaatttgggacaatgtgacggtgaagaagaacagtatctcgtcggcg
acagtacttgcatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTTTACGAGCATTCCCTTGGAG 300 231 1069 Antisense
GTGCTCCAAAATCTGTGACTCTTCT 630 477 1124 Antisense
TCATGATGGACTTCGTGCTGTTTTC 108 623 1197 Antisense
GGAGCTGCTGCTTTCGAAATTGCTG 594 521 1252 Antisense
GAAATTGCTGCCTACGTGATGTTGA 605 363 1267 Antisense
CTGAAGGGACGTGCCAAGCTCGGAG 481 73 1309 Antisense
GCTGAAGCGTTTGCTCAAGCTCTTC 314 297 1333 Antisense
TCAAGCTCTTCTCGTTATTCCAAAG 546 631 1347 Antisense
AAAACCGCCGCTGGACCAGATATCG 187 131 1432 Antisense
AGATATCGCCGTTGGACTCGATCTC 10 67 1449 Antisense
TCGTCGGCGACAGTACTTGCATGCA 487 603 1540 Antisense
Sequence Source Affymetrix Proprietary Database