[Home] | [Total List]

[188480_at] troponin

Description W03F8.1 /REP_DB=WormBase Gene ID /WP=CE17271 /TR=O44572 /GB=AAB94188.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=troponin
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 03      6grp_total > 14      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3955
1 2 3 4 range
A 5843.1
(3)
P 		4179.5
(0.2)
P 		2321.1
(-3)
P 		3384.1
(-1.2)
P 		3522
B 5884.4
(3)
P 		3391.1
(-1.6)
P 		2647.1
(-3)
P 		3835.5
(-0.8)
P 		3237
C 6275.9
(3)
P 		3386.2
(-1.4)
P 		2370.7
(-3)
P 		3691.3
(-1)
P 		3905
avr 6001.1
(3) 		3652.3
(-1) 		2446.3
(-3) 		3637
(-1) 		3555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3947
1 2 3 4 5 6 range
A 4130.9
(2)
P 		4737.7
(3)
P 		3361.2
(0.8)
P 		2799.3
(-0.1)
P 		1795.2
(-1.6)
P 		933.3
(-3)
P 		3804
B 4131.6
(3)
P 		3642
(2.1)
P 		2704.7
(0.3)
P 		2350.6
(-0.4)
P 		2015.5
(-1.1)
P 		1012.1
(-3)
P 		3120
C 4879.8
(3)
P 		3747.2
(1.2)
P 		3225.8
(0.4)
P 		1842
(-1.8)
P 		2024.9
(-1.5)
P 		1062.9
(-3)
P 		3817
avr 4380.8
(3) 		4042.3
(2.4) 		3097.2
(0.7) 		2330.6
(-0.6) 		1945.2
(-1.3) 		1002.8
(-3) 		3378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1632
1 2 3 4 range
A 2127.5
(3)
P 		907.3
(-1.5)
P 		606.8
(-2.6)
P 		495.4
(-3)
P 		1632
B 1876.5
(3)
P 		837.5
(-1.9)
P 		613.4
(-3)
P 		817.3
(-2)
P 		1263
C 2077.5
(3)
P 		973.6
(-1.6)
P 		826.2
(-2.2)
P 		622.4
(-3)
P 		1455
avr 2027.2
(3) 		906.1
(-1.9) 		682.1
(-2.8) 		645
(-3) 		1382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1582
1 2 3 4 5 6 range
A 761.5
(-0.8)
P 		1685
(3)
P 		732
(-0.9)
P 		710
(-1)
P 		541.7
(-1.7)
P 		227.2
(-3)
P 		1458
B 1437.6
(3)
P 		1212.3
(1.7)
P 		656.8
(-1.4)
P 		622.6
(-1.6)
P 		818.9
(-0.5)
P 		377.4
(-3)
P 		1060
C 1808.7
(3)
P 		1143.4
(0.3)
P 		821
(-1.1)
P 		370.4
(-2.9)
P 		655.2
(-1.8)
P 		355.8
(-3)
P 		1453
avr 1335.9
(2.9) 		1346.9
(3) 		736.6
(-0.6) 		567.7
(-1.6) 		671.9
(-0.9) 		320.1
(-3) 		1027
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11079
Sequence Type Exemplar sequence
Representative Public ID W03F8.1 NCBI
Target Description W03F8.1 /REP_DB=WormBase Gene ID /WP=CE17271 /TR=O44572 /GB=AAB94188.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=troponin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068340(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068340 NCBI Caenorhabditis elegans W03F8.1 (troponin) mRNA, complete cds. 9/11 None
SNAP00000036707 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5205606:5206894:1 9/11 None
GENEFINDER00000036714 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5205606:5206894:1 9/11 None
W03F8.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:5204581:5207113:1 gene:W03F8.1 9/11 None
W03F8.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:5204581:5207316:1 gene:W03F8.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5204602-5206900(+) 100.0 100.0
Public Domain and Genome References
Gene Title troponin
Gene Symbol tni-4
Ensembl W03F8.1
Entrez Gene 177295 Entrez gene
SwissProt O44572 EMBL-EBI
WormBase CE29829 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629235_S_AT wings up A dm
DROSGENOME1:143415_AT wings up A dm
Protein Similarities
Method ID Description E-Value
blast AAB94188 Troponin i protein 4 [Caenorhabditis elegans] ref|NP_500741.2| W03F8.1 [Caenorhabditis elegans] dbj|BAD89381.1| troponin I 4 [Caenorhabditis elegans] sp|O44572|TNNI4_CAEEL Troponin I 4 (TnI 4) 4.0E-60
blast AAB94188 Troponin i protein 4 [Caenorhabditis elegans] ref|NP_500741.2| W03F8.1 [Caenorhabditis elegans] dbj|BAD89381.1| troponin I 4 [Caenorhabditis elegans] sp|O44572|TNNI4_CAEEL Troponin I 4 (TnI 4) 5.0E-60
blast CAE72824 Hypothetical protein CBG20106 [Caenorhabditis briggsae] 4.0E-59
blast CAE72824 Hypothetical protein CBG20106 [Caenorhabditis briggsae] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 2.1E-26
Pfam IPR001978 EMBL-EBI Troponin 2.1E-26
Sequence
Target Sequence 
>C. ELEGANS:188480_AT
gctgatgaggtgagtcgtggcgcgcaaaatggcggacgcgagcgcaagaaggaagaggtg
cgtaagcgtctcgaggaggcctcaagaatgaagaaagccaagaaaggattcttgacacct
gagagaaagaagaagcttcgtaagcttttgatgatgaaggccgccgaagatttgaagcaa
caacaaatgttgaaagagcaagagagacaacgtattcttcaagaaagaatcattccactt
ccagatttggataacgaagatgacctcgaggcagtctacgatgaaatccgcgagagactc
atcgatcttgagtctgaaaactatgacgtcagctacatcgttcgtcaaaaggatttcgag
atcaacgagttgaccattgctgtcaacgatcttcgcggaaaattcgtgaagccaaccctg
aagaaggtgtccaagaccgagggaaaattcgacaagcttaagaagaaggaagccaccaaa
gtcgatttccgtgctcaactcaaggttgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGATGAGGTGAGTCGTGGCGCGC 515 295 28 Antisense
TCGTGGCGCGCAAAATGGCGGACGC 641 605 42 Antisense
GAAGAGGTGCGTAAGCGTCTCGAGG 70 339 79 Antisense
GAAGGCCGCCGAAGATTTGAAGCAA 523 333 183 Antisense
GAAGATGACCTCGAGGCAGTCTACG 201 339 283 Antisense
GGCAGTCTACGATGAAATCCGCGAG 18 537 297 Antisense
AATCCGCGAGAGACTCATCGATCTT 163 169 312 Antisense
CTATGACGTCAGCTACATCGTTCGT 252 225 348 Antisense
ATTGCTGTCAACGATCTTCGCGGAA 146 7 403 Antisense
GCCACCAAAGTCGATTTCCGTGCTC 204 279 499 Antisense
TTCCGTGCTCAACTCAAGGTTGTCG 562 699 514 Antisense
Sequence Source Affymetrix Proprietary Database