[Home] | [Total List]

[188479_at]

Description F44F4.5 /REP_DB=WormBase Gene ID /WP=CE01001 /GEN=sra-10 /TR=SW:Q20405 /GB=CAA85456.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 47      6grp_cgc > 10      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 129.6
(3)
P 		15.2
(-3)
A 		73.3
(0)
A 		61.1
(-0.6)
A 		114
B 164.4
(3)
A 		59.4
(-1.3)
A 		17.8
(-3)
A 		17
(-3)
A 		147
C 143.6
(3)
P 		62.2
(-2.3)
A 		51.6
(-3)
A 		97.5
(-0)
A 		92
avr 145.9
(3) 		45.6
(-3) 		47.6
(-2.9) 		58.5
(-2.2) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 165.6
(3)
A 		85.8
(-1.1)
A 		103.7
(-0.2)
A 		88.5
(-0.9)
A 		53.8
(-2.7)
A 		48.2
(-3)
A 		117
B 127.8
(3)
A 		92.9
(0.8)
A 		41.1
(-2.5)
A 		79.4
(-0.1)
A 		92.4
(0.7)
A 		33.8
(-3)
A 		94
C 121.6
(3)
A 		72.5
(-1.1)
P 		71.4
(-1.2)
P 		72.9
(-1)
A 		62.3
(-1.9)
A 		49.2
(-3)
A 		72
avr 138.3
(3) 		83.7
(-0.5) 		72.1
(-1.2) 		80.3
(-0.7) 		69.5
(-1.4) 		43.7
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 47.2
(3)
P 		3.3
(-3)
A 		19.2
(-0.8)
A 		8.9
(-2.2)
A 		44
B 52.4
(3)
A 		14.7
(-1.6)
A 		4.1
(-2.9)
A 		3.6
(-3)
A 		49
C 47.5
(3)
P 		17.9
(-2.7)
A 		18
(-2.7)
A 		16.4
(-3)
A 		31
avr 49
(3) 		12
(-2.6) 		13.8
(-2.4) 		9.6
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 30.5
(3)
A 		30.5
(3)
A 		22.6
(0.5)
A 		22.4
(0.4)
A 		16.2
(-1.6)
A 		11.7
(-3)
A 		19
B 44.5
(3)
A 		30.9
(0.6)
A 		10
(-3)
A 		21
(-1.1)
A 		37.5
(1.8)
A 		12.6
(-2.5)
A 		35
C 45.1
(3)
A 		22.1
(-1.5)
P 		18.2
(-2.3)
P 		14.7
(-3)
A 		20.2
(-1.9)
A 		16.5
(-2.6)
A 		30
avr 40
(3) 		27.8
(0.2) 		16.9
(-2.3) 		19.4
(-1.7) 		24.6
(-0.5) 		13.6
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3955
Sequence Type Exemplar sequence
Representative Public ID F44F4.5 NCBI
Target Description F44F4.5 /REP_DB=WormBase Gene ID /WP=CE01001 /GEN=sra-10 /TR=SW:Q20405 /GB=CAA85456.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026991(11), NM_001026992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026991 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-10) (sra-10) mRNA, complete cds. 11/11 None
NM_001026992 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-10) (sra-10) mRNA, complete cds. 11/11 None
SNAP00000037182 ENSEMBL cdna:SNAP chromosome:CEL140:II:10893262:10894999:-1 11/11 None
GENEFINDER00000037195 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10893111:10894999:-1 11/11 None
F44F4.5a ENSEMBL cdna:known chromosome:CEL140:II:10893262:10894999:-1 gene:F44F4.5 11/11 None
F44F4.5b ENSEMBL cdna:known chromosome:CEL140:II:10893262:10894999:-1 gene:F44F4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10893258-10894996(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44F4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85456 Hypothetical protein F44F4.5a [Caenorhabditis elegans] ref|NP_001022162.1| Serpentine Receptor, class A (alpha) family member (sra-10) [Caenorhabditis elegans] sp|Q20405|SRA10_CAEEL Serpentine receptor class alpha-10 (Protein sra-10) 1.0E-178
blast 2123261K chemosensory receptor 1.0E-176
blast CAE46667 Hypothetical protein F44F4.5b [Caenorhabditis elegans] ref|NP_001022163.1| Serpentine Receptor, class A (alpha) family member (sra-10) [Caenorhabditis elegans] 1.0E-176
blast CAA85456 Hypothetical protein F44F4.5a [Caenorhabditis elegans] ref|NP_001022162.1| Serpentine Receptor, class A (alpha) family member (sra-10) [Caenorhabditis elegans] sp|Q20405|SRA10_CAEEL Serpentine receptor class alpha-10 (Protein sra-10) 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022162.1 7 27-49,62-81,112-134,147-169,193-215,244-266,281-303
NP_001022163.1 7 27-49,62-81,112-134,147-169,193-215,242-264,279-301
F44F4.5a 7 27-49,62-81,112-134,147-169,193-215,244-266,281-303
F44F4.5b 7 27-49,62-81,112-134,147-169,193-215,242-264,279-301
SNAP00000037182 7 27-49,62-81,112-134,147-169,193-215,244-266,281-303
GENEFINDER00000037195 7 27-49,62-81,112-134,147-169,193-215,244-266,281-303
Sequence
Target Sequence 
>C. ELEGANS:188479_AT
aataattccacaatcctactcacatatgggtgcacttccaggagttattctgtcagttct
tgtggtcgcttgcagtatcgcagctcctctaatcattgcaattggtgatccatacgatga
tattgtgccaaactgtttcttttttcccgaacattctgctccgcgagccaatattttctt
ggtcacattgagcactctagttatcactagtatattcctaaacttcatcatcatatatgc
aaacaaaaagctggagaaaggttgcagaactcgtttctatgtgactcaaagatatcaaaa
acgagaagcactcatctcaactcgtatcatctcatatattgctgcgtcacagtttctcgg
attgacactttactcgacaatggtgttgactttgagacttcacaaatcaatgattcccat
ctctatttatcataatatggtttggtgggcttatactgttccattcgcagcggtctcctt
gccagctttacttatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATTCCACAATCCTACTCACAT 674 171 417 Antisense
TATTCTGTCAGTTCTTGTGGTCGCT 540 663 462 Antisense
TTGTGGTCGCTTGCAGTATCGCAGC 301 707 476 Antisense
TATCGCAGCTCCTCTAATCATTGCA 577 657 492 Antisense
TTCTTGGTCACATTGAGCACTCTAG 404 689 592 Antisense
TCATCTCAACTCGTATCATCTCATA 192 621 728 Antisense
TATTGCTGCGTCACAGTTTCTCGGA 530 663 753 Antisense
GTTTCTCGGATTGACACTTTACTCG 703 449 768 Antisense
AAATCAATGATTCCCATCTCTATTT 484 117 820 Antisense
GGTGGGCTTATACTGTTCCATTCGC 513 499 860 Antisense
TCTCCTTGCCAGCTTTACTTATATA 13 611 890 Antisense
Sequence Source Affymetrix Proprietary Database