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[188476_at] chitinase

Description R09D1.9 /REP_DB=WormBase Gene ID /WP=CE23907 /TR=Q21865 /GB=CAA93869.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 82      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 13.2
(-1.8)
A 		6.7
(-3)
A 		23.7
(0.2)
A 		38.1
(3)
A 		31
B 45.1
(3)
A 		29.7
(-1.6)
A 		26.2
(-2.6)
A 		25
(-3)
A 		20
C 27.2
(-1.7)
A 		28.1
(-1.6)
A 		13.3
(-3)
A 		76.8
(3)
P 		64
avr 28.5
(-1.3) 		21.5
(-2.9) 		21.1
(-3) 		46.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2.9
(-3)
A 		49
(3)
A 		46.3
(2.6)
A 		32.4
(0.8)
A 		43.1
(2.2)
A 		8.5
(-2.3)
A 		46
B 28.2
(3)
A 		27.7
(2.9)
A 		13.7
(-0.6)
A 		10.3
(-1.4)
A 		14.1
(-0.5)
A 		3.8
(-3)
A 		24
C 18.4
(-1)
A 		32.9
(0.9)
A 		30.5
(0.6)
A 		36
(1.3)
A 		48.4
(3)
A 		3.5
(-3)
A 		45
avr 16.5
(-0.8) 		36.5
(3) 		30.2
(1.8) 		26.2
(1) 		35.2
(2.8) 		5.3
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.8
(1.2)
A 		1.5
(-3)
A 		6.2
(3)
A 		5.6
(2.2)
A 		5
B 14.4
(3)
A 		7.3
(-1.7)
A 		6.1
(-2.5)
A 		5.3
(-3)
A 		9
C 9
(0.1)
A 		8.1
(-0.5)
A 		4.6
(-3)
A 		13
(3)
P 		8
avr 9.4
(3) 		5.6
(-3) 		5.6
(-3) 		8
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.5
(-3)
A 		17.4
(3)
A 		10.1
(0.4)
A 		8.2
(-0.3)
A 		13
(1.4)
A 		2.1
(-2.4)
A 		17
B 9.8
(3)
A 		9.2
(2.6)
A 		3.3
(-1.6)
A 		2.7
(-2.1)
A 		5.7
(0.1)
A 		1.4
(-3)
A 		8
C 6.8
(-0.7)
A 		10
(0.6)
A 		7.8
(-0.3)
A 		7.2
(-0.5)
A 		15.7
(3)
A 		1.2
(-3)
A 		15
avr 5.7
(-0.7) 		12.2
(3) 		7.1
(0.1) 		6
(-0.5) 		11.5
(2.6) 		1.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2657
Sequence Type Exemplar sequence
Representative Public ID R09D1.9 NCBI
Target Description R09D1.9 /REP_DB=WormBase Gene ID /WP=CE23907 /TR=Q21865 /GB=CAA93869.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063629 NCBI Caenorhabditis elegans R09D1.9 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010210 ENSEMBL cdna:SNAP chromosome:CEL140:II:9462446:9463003:-1 10/11 None
GENEFINDER00000010214 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9462446:9464002:-1 11/11 None
R09D1.9 ENSEMBL cdna:known chromosome:CEL140:II:9462446:9464002:-1 gene:R09D1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9462442-9463999(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.9
Entrez Gene 3565897 Entrez gene
SwissProt Q21865 EMBL-EBI
WormBase CE23907 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93869 Hypothetical protein R09D1.9 [Caenorhabditis elegans] ref|NP_496030.1| R09D1.9 [Caenorhabditis elegans] 0.0
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 1.0E-109
blast CAA93869 Hypothetical protein R09D1.9 [Caenorhabditis elegans] ref|NP_496030.1| R09D1.9 [Caenorhabditis elegans] 1.0E-109
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 6.0E-99
blast CAB05568 Hypothetical protein M01B2.6 [Caenorhabditis elegans] ref|NP_506770.2| M01B2.6 [Caenorhabditis elegans] 5.0E-65
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.5E-43
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.3E-18
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.6E-51
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.4E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496030.1 1 34-56
R09D1.9 1 34-56
GENEFINDER00000010214 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:188476_AT
gggaacgggcatatgacttcaaacaacttgttcaagatgtcgattttgtgaatatatact
caatggactattatggaccatggccagatgacttagcaggtgataccacgggaccatcag
caccgatttttggctgtccttggaaaaaaggagcatataatgtccaccactcggcaaaaa
tatattcttgtcgaacgaagaaatcaagtaaattcaatattgctattcctttctacgcaa
cactatgggaaaatgtctatgaaccattcccaagtccaggaagagatgtgtttagatacg
tcgcatcgaataatgggatgacaattggacaaagatatatgaatcgatcaattgtgaagc
agcaaggttttcagttggagcgatattcatatgacgaattgacaaaaggatcatttattt
ataattccacaactgtgagatatctgacatttgaaaccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACGGGCATATGACTTCAAACA 707 491 665 Antisense
GGACCATGGCCAGATGACTTAGCAG 286 523 739 Antisense
TAGCAGGTGATACCACGGGACCATC 325 651 758 Antisense
CACGGGACCATCAGCACCGATTTTT 601 199 771 Antisense
CAGCACCGATTTTTGGCTGTCCTTG 285 205 782 Antisense
CATATAATGTCCACCACTCGGCAAA 691 213 818 Antisense
TGCTATTCCTTTCTACGCAACACTA 307 575 885 Antisense
TGTCTATGAACCATTCCCAAGTCCA 131 559 918 Antisense
ATGTGTTTAGATACGTCGCATCGAA 337 49 950 Antisense
GCAGCAAGGTTTTCAGTTGGAGCGA 187 309 1023 Antisense
GAGATATCTGACATTTGAAACCGAG 460 395 1101 Antisense
Sequence Source Affymetrix Proprietary Database