[Home] | [Total List]

[188474_s_at] erp72

Description C14B9.2 /REP_DB=WormBase Gene ID /WP=CE00073 /TR=SW:P34329 /GB=AAA27952.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=erp72
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 02      6grp_total > 08      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1828
1 2 3 4 range
A 2045.9
(0.4)
P 		2745.8
(2.8)
P 		2800.8
(3)
P 		1071.4
(-3)
P 		1729
B 1964.2
(0.6)
P 		2483.1
(2.8)
P 		2536.3
(3)
P 		1082
(-3)
P 		1454
C 1803.2
(-0.6)
P 		2729.7
(2.4)
P 		2899.3
(3)
P 		1085
(-3)
P 		1814
avr 1937.8
(0.1) 		2652.9
(2.7) 		2745.5
(3) 		1079.5
(-3) 		1666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2527
1 2 3 4 5 6 range
A 3364.1
(3)
P 		2540.4
(0.5)
P 		2124.1
(-0.7)
P 		2937
(1.7)
P 		1372.8
(-3)
P 		1524.9
(-2.5)
P 		1991
B 3335.7
(3)
P 		2062.9
(-0.8)
P 		2172.9
(-0.5)
P 		2076.6
(-0.7)
P 		1319.4
(-3)
P 		1386.6
(-2.8)
P 		2016
C 3828.6
(3)
P 		2110.1
(-1.1)
P 		3283.4
(1.7)
P 		2264.1
(-0.7)
P 		1720
(-2)
P 		1301.5
(-3)
P 		2527
avr 3509.5
(3) 		2237.8
(-0.6) 		2526.8
(0.2) 		2425.9
(-0.1) 		1470.7
(-2.8) 		1404.3
(-3) 		2105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 744.9
(3)
P 		596
(1.5)
P 		732.2
(2.9)
P 		156.8
(-3)
P 		588
B 626.4
(3)
P 		613.3
(2.8)
P 		587.7
(2.4)
P 		230.6
(-3)
P 		396
C 596.9
(0)
P 		784.8
(1.4)
P 		1010.5
(3)
P 		183
(-3)
P 		828
avr 656.1
(1.8) 		664.7
(1.9) 		776.8
(3) 		190.1
(-3) 		587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1048
1 2 3 4 5 6 range
A 620.1
(-0.2)
P 		903.5
(3)
P 		462.6
(-2)
P 		744.9
(1.2)
P 		414.3
(-2.5)
P 		371.3
(-3)
P 		532
B 1160.7
(3)
P 		686.6
(-1.4)
P 		527.6
(-2.9)
P 		550
(-2.7)
P 		536
(-2.8)
P 		517.1
(-3)
P 		644
C 1419.1
(3)
P 		643.9
(-1.7)
P 		835.7
(-0.6)
P 		455.3
(-2.9)
P 		556.6
(-2.3)
P 		435.7
(-3)
P 		983
avr 1066.6
(3) 		744.7
(-0.1) 		608.6
(-1.4) 		583.4
(-1.6) 		502.3
(-2.4) 		441.4
(-3) 		625
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188474_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7958
Sequence Type Exemplar sequence
Representative Public ID C14B9.2 NCBI
Target Description C14B9.2 /REP_DB=WormBase Gene ID /WP=CE00073 /TR=SW:P34329 /GB=AAA27952.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=erp72
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066374 NCBI Caenorhabditis elegans C14B9.2 (erp72) mRNA, complete cds. 11/11 None
GENEFINDER00000018775 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8130786:8136324:1 11/11 None
SNAP00000018771 ENSEMBL cdna:SNAP chromosome:CEL140:III:8133598:8136324:1 11/11 None
C14B9.2.2 ENSEMBL cdna:known chromosome:CEL140:III:8133584:8136569:1 gene:C14B9.2 11/11 None
C14B9.2.1 ENSEMBL cdna:known chromosome:CEL140:III:8133585:8136569:1 gene:C14B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8130781-8136320(+) 100.0 100.0
Public Domain and Genome References
Gene Title erp72
Ensembl C14B9.2
Entrez Gene 176147 Entrez gene
SwissProt P34329 EMBL-EBI
WormBase CE30601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262504_AT protein disulfide isomerase, putative at
ATGENOME1:15976_AT protein disulfide isomerase, putative at
CANINE:1584019_AT similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) cfa
CANINE_2:CFA.4275.2.S1_AT similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) cfa
CANINE_2:CFAAFFX.6054.1.S1_AT similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) cfa
CANINE_2:CFAAFFX.6054.1.S1_S_AT similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) cfa
CHICKEN:GGAAFFX.12367.1.S1_AT protein disulfide isomerase family A, member 4 gga
CHICKEN:GGAAFFX.12367.1.S1_S_AT protein disulfide isomerase family A, member 4 gga
HG-U133_PLUS_2:208658_AT protein disulfide isomerase family A, member 4 hs
HG-U133A_2:208658_AT protein disulfide isomerase family A, member 4 hs
HG-U133A:208658_AT protein disulfide isomerase family A, member 4 hs
HG-FOCUS:208658_AT protein disulfide isomerase family A, member 4 hs
HG-U133A:211048_S_AT protein disulfide isomerase family A, member 4 hs
HG-U133_PLUS_2:211048_S_AT protein disulfide isomerase family A, member 4 hs
HG-U133A_2:211048_S_AT protein disulfide isomerase family A, member 4 hs
U133_X3P:G13623480_3P_S_AT protein disulfide isomerase family A, member 4 hs
U133_X3P:G12653312_3P_AT protein disulfide isomerase family A, member 4 hs
HG-U95AV2:39113_AT protein disulfide isomerase family A, member 4 hs
MU11KSUBA:J05186_S_AT protein disulfide isomerase associated 4 mm
MG-U74AV2:95423_AT protein disulfide isomerase associated 4 mm
MOE430A:1416497_AT protein disulfide isomerase associated 4 mm
MOUSE430A_2:1416497_AT protein disulfide isomerase associated 4 mm
MOUSE430_2:1416497_AT protein disulfide isomerase associated 4 mm
MU19KSUBA:TC24722_S_AT Protein disulfide isomerase associated 4 (Pdia4), mRNA mm
MU19KSUBC:TC40341_S_AT Protein disulfide isomerase associated 4 (Pdia4), mRNA mm
RT-U34:M86870_AT protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RG-U34A:M86870_AT protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RG-U34B:RC_AI045710_AT protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RAE230A:1370007_AT protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RAT230_2:1370007_AT protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RAE230B:1378532_AT Protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
RAT230_2:1378532_AT Protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16853 isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM22024 Hypothetical protein C14B9.2 [Caenorhabditis elegans] ref|NP_498775.2| C14B9.2 [Caenorhabditis elegans] sp|P34329|PDIA4_CAEEL Probable protein disulfide-isomerase A4 precursor (ERp-72 homolog) 0.0
blast CAE70206 Hypothetical protein CBG16681 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.6E-50
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 6.7E-54
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 3.6E-49
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.6E-50
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 6.7E-54
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 3.6E-49
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.6E-50
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 6.7E-54
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 3.6E-49
Sequence
Target Sequence 
>C. ELEGANS:188474_S_AT
gacaagtacaagttcgctgttgctgatgaagaggagtttgccaaagaacttgaagagctt
ggacttggagattctggacttgagcataatgtagttgtatttggttatgatggaaagaaa
tatccaatgaatccagatgagtttgatggagaacttgatgagaatcttgaagcattcatg
aaacaaatcagtagtggaaaggccaaggctcacgtgaagagtgctccagctccaaaagat
gataagggaccagttaaaaccgttgttggatccaactttgataagattgtcaatgatgaa
tcaaaggatgtacttattgagttttatgctccatggtgtggacattgcaagagctttgaa
tcaaaatacgttgaattggctcaagctttgaagaagacccagccaaatgttgttctcgcc
aagatggacgccacgattaacgatgctccaagccagttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTACAAGTTCGCTGTTGCTG 416 365 1399 Antisense
GGACTTGGAGATTCTGGACTTGAGC 267 525 1459 Antisense
AGTGGAAAGGCCAAGGCTCACGTGA 595 57 1591 Antisense
TCACGTGAAGAGTGCTCCAGCTCCA 404 625 1608 Antisense
GTACTTATTGAGTTTTATGCTCCAT 595 459 1708 Antisense
GGTGTGGACATTGCAAGAGCTTTGA 356 499 1733 Antisense
AATACGTTGAATTGGCTCAAGCTTT 278 171 1763 Antisense
AGACCCAGCCAAATGTTGTTCTCGC 384 71 1793 Antisense
TTGTTCTCGCCAAGATGGACGCCAC 517 703 1808 Antisense
GGACGCCACGATTAACGATGCTCCA 31 525 1824 Antisense
TTAACGATGCTCCAAGCCAGTTCGC 98 685 1835 Antisense
Sequence Source Affymetrix Proprietary Database