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[188467_at] protease

Description F21F8.6 /REP_DB=WormBase Gene ID /WP=CE09541 /TR=O01529 /GB=AAC47995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster 6grp_total > 53      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 35.6
(-3)
A 		79.8
(3)
A 		61.2
(0.5)
A 		56.2
(-0.2)
A 		44
B 31.9
(-0.7)
A 		70
(3)
A 		21.7
(-1.7)
A 		8.8
(-3)
A 		61
C 3.5
(-3)
A 		34.1
(1.1)
A 		48.5
(3)
M 		5.8
(-2.7)
A 		45
avr 23.7
(-3) 		61.3
(3) 		43.8
(0.2) 		23.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 10.7
(-3)
A 		14.7
(-1.9)
A 		33.4
(3)
A 		32.1
(2.7)
A 		16.9
(-1.4)
A 		32
(2.6)
A 		23
B 39.8
(-0.4)
A 		4.2
(-2.8)
A 		88.7
(3)
A 		9.7
(-2.5)
A 		1.8
(-3)
A 		2.9
(-2.9)
A 		87
C 14.6
(-2.2)
A 		18
(-1.9)
A 		89.4
(3)
A 		5.6
(-2.8)
A 		2.4
(-3)
A 		3.5
(-2.9)
A 		87
avr 21.7
(-1.6) 		12.3
(-2.5) 		70.5
(3) 		15.8
(-2.2) 		7
(-3) 		12.8
(-2.5) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13
(0.2)
A 		17.3
(3)
A 		16
(2.1)
A 		8.2
(-3)
A 		9
B 10.2
(0.2)
A 		17.3
(3)
A 		5
(-1.8)
A 		1.9
(-3)
A 		15
C 1.2
(-2.9)
A 		9.8
(0.3)
A 		16.9
(3)
M 		1
(-3)
A 		16
avr 8.1
(-0.6) 		14.8
(3) 		12.6
(1.8) 		3.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2
(-3)
A 		5.2
(0.1)
A 		7.3
(2.2)
A 		8.1
(3)
A 		5.1
(0)
A 		7.8
(2.7)
A 		6
B 13.9
(0.8)
A 		1.4
(-2.8)
A 		21.6
(3)
A 		2.6
(-2.5)
A 		0.7
(-3)
A 		1.1
(-2.9)
A 		21
C 5.4
(-1.7)
A 		5.5
(-1.7)
A 		22.8
(3)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		1.2
(-2.9)
A 		22
avr 7.1
(-1) 		4
(-2.3) 		17.2
(3) 		3.9
(-2.3) 		2.2
(-3) 		3.4
(-2.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12043
Sequence Type Exemplar sequence
Representative Public ID F21F8.6 NCBI
Target Description F21F8.6 /REP_DB=WormBase Gene ID /WP=CE09541 /TR=O01529 /GB=AAC47995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072731 NCBI Caenorhabditis elegans F21F8.6 (protease) mRNA, complete cds. 11/11 None
SNAP00000008544 ENSEMBL cdna:SNAP chromosome:CEL140:V:8268394:8269865:-1 11/11 None
GENEFINDER00000008567 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8268394:8269961:-1 11/11 None
F21F8.6 ENSEMBL cdna:known chromosome:CEL140:V:8268417:8269934:-1 gene:F21F8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8268394-8269962(-) 100.0 100.0
Public Domain and Genome References
Gene Title protease
Ensembl F21F8.6
Entrez Gene 184789 Entrez gene
SwissProt O01529 EMBL-EBI
WormBase CE35285 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66089 Hypothetical protein CBG11306 [Caenorhabditis briggsae] 1.0E-153
blast CAE66089 Hypothetical protein CBG11306 [Caenorhabditis briggsae] 1.0E-143
blast CAE66088 Hypothetical protein CBG11305 [Caenorhabditis briggsae] 1.0E-102
blast AAC47996 Aspartyl protease protein 6 [Caenorhabditis elegans] ref|NP_505133.1| F21F8.7 [Caenorhabditis elegans] 1.0E-101
blast AAC47995 Hypothetical protein F21F8.6 [Caenorhabditis elegans] ref|NP_505132.2| F21F8.6 [Caenorhabditis elegans] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.7E-41
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.7E-41
Sequence
Target Sequence 
>C. ELEGANS:188467_AT
ggctgttgatggcgtagttccaccacttatcaatgctattaaacaaggaattcttgatca
accattgttcagtgtattcttggaacatagaggaacattgacaaatgttggaggaggagt
gttcacatatggagcagtagacactactaattgtgaaccagtgattggatatcagccatt
gtcatctgccacttattttcagttcaaggcaaatcgattccgactgggaaaatatttgaa
tgcaaaagttgttgacgtgatttcggatactggaacttctttcttgggtggtcccagtgt
agttattaatgaaattgcaaagcaggctggcgctacctactatatccttggagaagcgta
cgtaatcgattgtgatgctactcctggaccacttgaagttacaattggtggccatgatta
tcaaatcgaacactacaattatattgcggatgttggcgatggaacgtgtgtgatggctct
cttcccaatggattttggaggttttggaccttcctggattcttggagacccgtttatcag
gcaatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGTTGATGGCGTAGTTCCACCA 168 539 450 Antisense
AGTTCCACCACTTATCAATGCTATT 221 65 465 Antisense
ATATCAGCCATTGTCATCTGCCACT 79 21 618 Antisense
ACTTCTTTCTTGGGTGGTCCCAGTG 25 101 724 Antisense
ATTGCAAAGCAGGCTGGCGCTACCT 487 5 763 Antisense
CGCTACCTACTATATCCTTGGAGAA 137 255 780 Antisense
ATCGATTGTGATGCTACTCCTGGAC 627 35 814 Antisense
GCTACTCCTGGACCACTTGAAGTTA 210 303 826 Antisense
GGAACGTGTGTGATGGCTCTCTTCC 9 531 910 Antisense
GGACCTTCCTGGATTCTTGGAGACC 134 519 955 Antisense
GGAGACCCGTTTATCAGGCAATATT 157 519 973 Antisense
Sequence Source Affymetrix Proprietary Database