[Home] | [Total List]

[188465_s_at] chitinase /// chitinase

Description R09D1.8 /REP_DB=WormBase Gene ID /WP=CE25073 /TR=Q21864 /GB=CAA93868.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 20      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 27
(-3)
A 		92
(-1.5)
A 		50.5
(-2.5)
A 		284.7
(3)
P 		258
B 55.7
(-3)
A 		95.3
(-1.5)
P 		57.1
(-2.9)
A 		214.9
(3)
P 		159
C 34.6
(-3)
A 		69.3
(-2.2)
A 		49.8
(-2.7)
A 		303
(3)
P 		268
avr 39.1
(-3) 		85.5
(-1.8) 		52.5
(-2.6) 		267.5
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 7.6
(-3)
A 		45.5
(-0.1)
P 		87.1
(3)
P 		52.3
(0.4)
A 		39.5
(-0.6)
A 		38.8
(-0.6)
A 		80
B 45
(-0.9)
A 		82.3
(3)
P 		40.9
(-1.3)
A 		73.1
(2)
A 		24.9
(-3)
A 		40
(-1.4)
A 		57
C 38.9
(-2.6)
A 		89.6
(3)
A 		73.6
(1.2)
A 		53.3
(-1)
A 		34.9
(-3)
A 		44.9
(-1.9)
A 		55
avr 30.5
(-3) 		72.5
(3) 		67.2
(2.2) 		59.6
(1.2) 		33.1
(-2.6) 		41.2
(-1.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.8
(-3)
A 		20
(-1.1)
A 		13.2
(-2.4)
A 		41.7
(3)
P 		32
B 17.8
(-2.2)
A 		23.5
(-1.1)
P 		13.2
(-3)
A 		45.8
(3)
P 		33
C 11.4
(-3)
A 		19.9
(-1.7)
A 		17.3
(-2.1)
A 		51.1
(3)
P 		40
avr 13
(-3) 		21.1
(-1.5) 		14.6
(-2.7) 		46.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.4
(-3)
A 		16.2
(2)
P 		19
(3)
P 		13.3
(1.1)
A 		11.9
(0.6)
A 		9.5
(-0.2)
A 		18
B 15.7
(-1)
A 		27.4
(3)
P 		9.9
(-3)
A 		19.4
(0.3)
A 		10.1
(-2.9)
A 		14.9
(-1.3)
A 		18
C 14.4
(-1.7)
A 		27.3
(3)
A 		18.7
(-0.1)
A 		10.7
(-3)
A 		11.3
(-2.8)
A 		15
(-1.4)
A 		17
avr 10.5
(-3) 		23.6
(3) 		15.9
(-0.5) 		14.5
(-1.2) 		11.1
(-2.7) 		13.1
(-1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188465_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3957
Sequence Type Exemplar sequence
Representative Public ID R09D1.8 NCBI
Target Description R09D1.8 /REP_DB=WormBase Gene ID /WP=CE25073 /TR=Q21864 /GB=CAA93868.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063628(11), NM_063625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063628 NCBI Caenorhabditis elegans R09D1.8 (chitinase) mRNA, complete cds. 11/11 None
NM_063625 NCBI Caenorhabditis elegans R09D1.6 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010206 ENSEMBL cdna:SNAP chromosome:CEL140:II:9445999:9454206:-1 11/11 None
SNAP00000010209 ENSEMBL cdna:SNAP chromosome:CEL140:II:9458930:9461695:-1 11/11 None
GENEFINDER00000010215 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9449880:9454206:-1 11/11 None
GENEFINDER00000010218 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9458887:9461881:-1 11/11 None
R09D1.6 ENSEMBL cdna:known chromosome:CEL140:II:9452610:9454193:-1 gene:R09D1.6 11/11 None
R09D1.8 ENSEMBL cdna:known chromosome:CEL140:II:9460037:9461881:-1 gene:R09D1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9460033-9461878(-) 100.0 100.0
chrII:9452606-9459413(-) 86.28 86.28
Public Domain and Genome References
Gene Title chitinase
chitinase
Ensembl R09D1.6
R09D1.8
Entrez Gene 174502 Entrez gene
187736 Entrez gene
SwissProt Q21862 EMBL-EBI
Q21864 EMBL-EBI
WormBase CE03547 Wormbase
CE25073 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93868 Hypothetical protein R09D1.8 [Caenorhabditis elegans] ref|NP_496029.1| R09D1.8 [Caenorhabditis elegans] 0.0
blast CAA93866 Hypothetical protein R09D1.6 [Caenorhabditis elegans] ref|NP_496026.1| R09D1.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-31
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-99
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-81
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-100
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.0E-33
Pfam IPR000719 EMBL-EBI Protein kinase 6.2E-45
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-99
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-100
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.0E-8
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-99
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496029.1 1 31-53
NP_496026.1 1 27-49
R09D1.6 1 27-49
R09D1.8 1 31-53
SNAP00000010206 1 35-57
GENEFINDER00000010215 1 35-57
GENEFINDER00000010218 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:188465_S_AT
ggtccatggcaaaacgatgccggcatgataactggtgcagcttctcaacttttcaatggc
gttaatggagttccgggaagaaaaacttataatattcatcactcaacagagagatatgtt
tgtaaaactggtcaatctgacaaatataacattgcgattccattttatacaatgctctgg
aagcatgtgaaaggtccagttaaccctcctaatattgaaatttatcgaaatgcaacattt
caaggaggagttgttggagaaacgagtatgtctcgaaaattggttcaagaggaaggctat
gatttttcaaaccctacgtacaaccctgaaatcagagctgcattcaaatataatgctact
acagaaacattcctaacatttgaaacgaatgacacgattgcagcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCCATGGCAAAACGATGCCGGCA 444 501 805 Antisense
GATGCCGGCATGATAACTGGTGCAG 268 415 820 Antisense
GATAACTGGTGCAGCTTCTCAACTT 321 423 831 Antisense
CAATGGCGTTAATGGAGTTCCGGGA 601 61 858 Antisense
TGTGAAAGGTCCAGTTAACCCTCCT 346 545 990 Antisense
TCCAGTTAACCCTCCTAATATTGAA 285 589 999 Antisense
GAGTATGTCTCGAAAATTGGTTCAA 398 399 1068 Antisense
GGCTATGATTTTTCAAACCCTACGT 190 537 1099 Antisense
CCCTACGTACAACCCTGAAATCAGA 490 187 1116 Antisense
AACCCTGAAATCAGAGCTGCATTCA 641 145 1126 Antisense
ACGAATGACACGATTGCAGCAAAAA 617 91 1189 Antisense
Sequence Source Affymetrix Proprietary Database