[Home] | [Total List]

[188464_at]

Description F26E4.7 /REP_DB=WormBase Gene ID /WP=CE09691 /TR=P90848 /GB=CAB03000.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fasciclin
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 75      4grp_total > 04      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 194.5
(-0.1)
P 		110.4
(-3)
P 		150.9
(-1.6)
P 		281.7
(3)
P 		171
B 164.1
(-0.9)
P 		103.7
(-3)
P 		147.1
(-1.5)
P 		277.2
(3)
P 		174
C 188.1
(-1.4)
P 		159
(-2.4)
P 		140.4
(-3)
P 		318.1
(3)
P 		178
avr 182.2
(-0.9) 		124.4
(-3) 		146.1
(-2.2) 		292.3
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 187
(-1.8)
P 		167.3
(-3)
P 		198.7
(-1.1)
P 		266.8
(3)
P 		184.5
(-2)
P 		215.8
(-0.1)
P 		100
B 182.6
(-1.5)
P 		165.7
(-3)
P 		191.2
(-0.8)
P 		233.7
(3)
P 		176.1
(-2.1)
P 		203.2
(0.3)
P 		68
C 173.5
(-0.4)
P 		185.8
(0.3)
P 		178.7
(-0.1)
P 		156.4
(-1.4)
P 		128.3
(-3)
P 		233.1
(3)
P 		105
avr 181
(-1.1) 		172.9
(-1.9) 		189.5
(-0.2) 		219
(3) 		163
(-3) 		217.4
(2.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 70.8
(3)
P 		24
(-3)
P 		39.4
(-1)
P 		41.2
(-0.8)
P 		47
B 52.3
(1.8)
P 		25.6
(-3)
P 		34.1
(-1.5)
P 		59.1
(3)
P 		34
C 62.3
(3)
P 		45.7
(-3)
P 		48.9
(-1.8)
P 		53.6
(-0.1)
P 		17
avr 61.8
(3) 		31.8
(-3) 		40.8
(-1.2) 		51.3
(0.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 34.5
(-3)
P 		59.5
(1.5)
P 		43.3
(-1.4)
P 		67.7
(3)
P 		55.7
(0.8)
P 		52.5
(0.3)
P 		33
B 63.5
(0.5)
P 		55.2
(-1.2)
P 		46.4
(-3)
P 		61.9
(0.2)
P 		71.5
(2.1)
P 		75.8
(3)
P 		29
C 64.3
(1.2)
P 		56.7
(0.3)
P 		45.5
(-1.2)
P 		31.4
(-3)
P 		41.5
(-1.7)
P 		78
(3)
P 		47
avr 54.1
(-0.7) 		57.1
(0) 		45.1
(-3) 		53.7
(-0.8) 		56.2
(-0.2) 		68.8
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2279
Sequence Type Exemplar sequence
Representative Public ID F26E4.7 NCBI
Target Description F26E4.7 /REP_DB=WormBase Gene ID /WP=CE09691 /TR=P90848 /GB=CAB03000.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fasciclin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171843(11), NM_170913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171843 NCBI Caenorhabditis elegans F26E4.7b (fasciclin) mRNA, complete cds. 11/11 None
NM_170913 NCBI Caenorhabditis elegans F26E4.7a (fasciclin) mRNA, complete cds. 11/11 None
SNAP00000026227 ENSEMBL cdna:SNAP chromosome:CEL140:I:9782401:9787445:1 11/11 None
GENEFINDER00000026243 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9782401:9787445:1 11/11 None
F26E4.7b ENSEMBL cdna:known chromosome:CEL140:I:9782328:9787651:1 gene:F26E4.7 11/11 None
F26E4.7a ENSEMBL cdna:known chromosome:CEL140:I:9782401:9787445:1 gene:F26E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9782331-9787376(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26E4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30437 Hypothetical protein F26E4.7b [Caenorhabditis elegans] ref|NP_740907.1| F26E4.7b [Caenorhabditis elegans] 0.0
blast CAB03000 Hypothetical protein F26E4.7a [Caenorhabditis elegans] ref|NP_740906.1| F26E4.7a [Caenorhabditis elegans] 0.0
blast CAE60229 Hypothetical protein CBG03800 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000782 EMBL-EBI Beta-Ig-H3/fasciclin 1.7E-4
Sequence
Target Sequence 
>C. ELEGANS:188464_AT
ggtgtaccatatcagtcactttgggagattatgaggaatgagagtagaattcaagcatca
ttccatatgatgagcaacttacaacttcgatactcaatggatccgtggcaagttcttaca
cctgaacaaaatttcactttctttgtaccaactaatgaagcgtggcataaacaatcaact
tcacttgttgctcgaatgaatgatggaaatcattggcaagcactgcagtatgtttacaaa
cggcatattgtgcagggacaggcattaatgtacacagatcttcgtgaacgaacctatgta
atgatgaatgatgaaaaagttgtgattaggagaagagggagattcttcgagttgtattgg
ccacgtggagatcgtcgagcacaagtactagaaggtggtgaaatagcaggaatcaatgga
tatatgcatatgattgatagtgttttaatatatgaaccggatcttcgagctcatgcgtgt
acaactgagccagtgttcctccaatttcttgtagtttgtctggttatggtatggcgaccc
ggatggtttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTACCATATCAGTCACTTTGGG 141 499 1465 Antisense
GATGAGCAACTTACAACTTCGATAC 291 411 1533 Antisense
GGATCCGTGGCAAGTTCTTACACCT 678 509 1563 Antisense
TTTCACTTTCTTTGTACCAACTAAT 259 673 1596 Antisense
ACAATCAACTTCACTTGTTGCTCGA 326 115 1635 Antisense
GATTCTTCGAGTTGTATTGGCCACG 127 431 1805 Antisense
TGGCCACGTGGAGATCGTCGAGCAC 527 543 1822 Antisense
GATCTTCGAGCTCATGCGTGTACAA 63 419 1924 Antisense
TACAACTGAGCCAGTGTTCCTCCAA 301 641 1944 Antisense
GTGTTCCTCCAATTTCTTGTAGTTT 572 485 1957 Antisense
TGGTATGGCGACCCGGATGGTTTAC 597 551 1991 Antisense
Sequence Source Affymetrix Proprietary Database