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[188462_at] YIB9 like

Description F45E6.2 /REP_DB=WormBase Gene ID /WP=CE17828 /TR=Q20435 /GB=CAA92180.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=YIB9 like
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 71      6grp_total > 08      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 324.9
(-2.1)
P 		260.3
(-3)
P 		257.2
(-3)
P 		703.7
(3)
P 		447
B 279.8
(-2.1)
P 		209
(-3)
P 		215
(-2.9)
P 		678.4
(3)
P 		469
C 343.9
(-1.3)
P 		221.5
(-3)
P 		229.1
(-2.9)
P 		643.3
(3)
P 		422
avr 316.2
(-1.8) 		230.3
(-3) 		233.8
(-3) 		675.1
(3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 361.2
(3)
P 		341.5
(2)
P 		293.6
(-0.4)
P 		268.7
(-1.6)
P 		241.6
(-3)
P 		347.9
(2.3)
P 		120
B 428.2
(3)
P 		272.1
(-0.9)
P 		366.5
(1.5)
P 		341.1
(0.8)
P 		188.7
(-3)
P 		366.1
(1.4)
P 		240
C 397.2
(0.6)
P 		293.2
(-1.8)
P 		334
(-0.8)
P 		499.2
(3)
P 		240.5
(-3)
P 		321.3
(-1.1)
P 		259
avr 395.5
(3) 		302.3
(-0.3) 		331.4
(0.8) 		369.7
(2.1) 		223.6
(-3) 		345.1
(1.2) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 118.3
(3)
P 		56.5
(-3)
P 		67.2
(-2)
P 		103
(1.5)
P 		62
B 89.2
(-0.5)
P 		51.6
(-2.9)
P 		49.8
(-3)
P 		144.6
(3)
P 		95
C 113.8
(3)
P 		63.7
(-3)
P 		79.9
(-1.1)
P 		108.5
(2.4)
P 		50
avr 107.1
(1.9) 		57.3
(-3) 		65.6
(-2.2) 		118.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 66.6
(-2.7)
P 		121.4
(3)
P 		64
(-3)
P 		68.2
(-2.6)
P 		72.9
(-2.1)
P 		84.7
(-0.8)
P 		57
B 149
(3)
P 		90.6
(-1.8)
P 		89
(-2)
P 		90.3
(-1.9)
P 		76.7
(-3)
P 		136.5
(2)
P 		72
C 147.2
(3)
P 		89.5
(-2)
P 		85
(-2.4)
P 		100.4
(-1)
P 		77.8
(-3)
P 		107.6
(-0.4)
P 		69
avr 120.9
(3) 		100.5
(0.3) 		79.3
(-2.5) 		86.3
(-1.6) 		75.8
(-3) 		109.6
(1.5) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16066
Sequence Type Exemplar sequence
Representative Public ID F45E6.2 NCBI
Target Description F45E6.2 /REP_DB=WormBase Gene ID /WP=CE17828 /TR=Q20435 /GB=CAA92180.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=YIB9 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077693 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-6) (atf-6) mRNA, complete cds. 11/11 None
SNAP00000017822 ENSEMBL cdna:SNAP chromosome:CEL140:X:12480869:12484193:1 11/11 None
GENEFINDER00000017832 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12480869:12484193:1 11/11 None
F45E6.2 ENSEMBL cdna:known chromosome:CEL140:X:12480869:12484808:1 gene:F45E6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12480868-12484193(+) 100.0 100.0
Public Domain and Genome References
Gene Title YIB9 like
Gene Symbol atf-6
Ensembl F45E6.2
Entrez Gene 181405 Entrez gene
SwissProt Q20435 EMBL-EBI
WormBase CE17828 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92180 Hypothetical protein F45E6.2 [Caenorhabditis elegans] ref|NP_510094.1| ATF (cAMP-dependent transciption factor) family member (atf-6) [Caenorhabditis elegans] 0.0
blast CAE57240 Hypothetical protein CBG00118 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR010377 EMBL-EBI Protein of unknown function DUF972 4.9E-7
Sequence
Target Sequence 
>C. ELEGANS:188462_AT
gcaaaaattcctactcaacaaccaatccacaactatccgaactccactcaaaatgattgt
gatatgtacaaactaaacgccacagagacaataagagtaaacaacgacattgagcgctgg
gtacaagtacattcatttgataatgttccaatgaagttttcgggaggactattaaataag
gaagcaatgcgaaagttcaactacgcacagaaagtaaaaccagcctcagtttatggacca
cagacattggcggttcaaaagaaatcagagcaagcggcgctcagatctcgggaacgtaca
tggaagcagttggatctactgaagaccggaaacaatattcaactggataacgagaaaatt
caacgtaaacgacaagatattgacaaaatcgcttcaattgttcgccaaaagggagataca
ctgtacattatgacacttcaagactacgtgcttctgccttcattgattaaaggagcaaac
tcggttcccaaactatcgttgctcctgcctagtgttccaatgaatggaactctccaagat
cagtatactcttcttcgagttgattgtgaagtgacagggactggccaattgacactttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAAATTCCTACTCAACAACCAA 634 317 1153 Antisense
ACTATCCGAACTCCACTCAAAATGA 688 101 1184 Antisense
ACAACGACATTGAGCGCTGGGTACA 417 111 1253 Antisense
CAGCCTCAGTTTATGGACCACAGAC 210 203 1373 Antisense
GCGCTCAGATCTCGGGAACGTACAT 677 287 1429 Antisense
AATCGCTTCAATTGTTCGCCAAAAG 52 169 1539 Antisense
CACTTCAAGACTACGTGCTTCTGCC 465 197 1586 Antisense
GTGCTTCTGCCTTCATTGATTAAAG 47 479 1600 Antisense
CTCCTGCCTAGTGTTCCAATGAATG 156 235 1654 Antisense
GGAACTCTCCAAGATCAGTATACTC 17 531 1678 Antisense
AGGGACTGGCCAATTGACACTTTCC 262 57 1728 Antisense
Sequence Source Affymetrix Proprietary Database